YMR317W (YMR317W)


Gene profile

Gene name: YMR317W
Reference locus (S288C): YMR317W
Gene biotype: protein_coding

Description: Uncharacterized protein YMR317W; Putative protein of unknown function; has some similarity to sialidase from Trypanosoma; YMR317W is not an essential gene

Top 10 interactors (score): PRM7 (0.779); YDL177C (0.767); YAR047C (0.76); YAL064W-B (0.75); CSS3 (0.748); YHR213W-A (0.746); YKL068W-A (0.744); ISF1 (0.693); YHR213W (0.618); IZH2 (0.614); CSS1 (0.613); IZH4 (0.612); FMP27 (0.569); SGE1 (0.568); FLO1 (0.567); FLO9 (0.525); IMA5 (0.523); TIR2 (0.522); ATP8 (0.521); YPR195C (0.521)

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser


Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005307.1:946920-950262:+ gene-YMR317W_AKU4011 rna-NM_001182830.2_AKU4011 cds-NP_014050.2_AKU4011 92.4 95.7 Unannotated 1 1 0 False False False True False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000069.1:4050-7292:- gene-YMR317W_BG1 rna-NM_001182830.2_BG1 cds-NP_014050.2_BG1 93.1 94.7 Verified 1 1 1 False True False False False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005515.1:892329-895384:+ gene-YMR317W_Bruggeman rna-NM_001182830.2_Bruggeman cds-NP_014050.2_Bruggeman 85.0 87.3 Unannotated 1 1 0 False False False True False
CAT1 GCA_001738705.1 Bioethanol South America CM005531.1:894893-898153:+ gene-YMR317W_CAT1 rna-NM_001182830.2_CAT1 cds-NP_014050.2_CAT1 93.5 95.2 Verified 1 1 1 False True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005371.1:879173-882563:+ gene-YMR317W_CBS1585 rna-NM_001182830.2_CBS1585 cds-NP_014050.2_CBS1585 93.3 97.1 Unannotated 1 1 0 False False False True False
CBS436 GCA_001738355.1 Sake Asia CM005355.1:901461-904955:+ gene-YMR317W_CBS436 rna-NM_001182830.2_CBS436 cds-NP_014050.2_CBS436 94.9 100.0 Mismatch 1 1 1 False True False False False
CBS6412 GCA_001738345.1 Sake Asia CM005339.1:989894-993474:+ gene-YMR317W_CBS6412 rna-NM_001182830.2_CBS6412 cds-NP_014050.2_CBS6412 93.2 99.9 Unannotated 1 1 0 False False False True False
CBS6413 GCA_001738265.1 Sake Asia CM005323.1:878294-881744:+ gene-YMR317W_CBS6413 rna-NM_001182830.2_CBS6413 cds-NP_014050.2_CBS6413 94.8 98.9 Unannotated 1 1 0 False False False True False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001534.1:901924-905229:+ gene-YMR317W_CENPK1137D rna-NM_001182830.2_CENPK1137D cds-NP_014050.2_CENPK1137D 89.7 96.5 Verified 1 1 1 False True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005486.1:938924-942283:+ gene-YMR317W_EthanolRed rna-NM_001182830.2_EthanolRed cds-NP_014050.2_EthanolRed 93.2 96.3 Verified 1 1 1 False True False False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005547.1:885165-888533:+ gene-YMR317W_FaliES1 rna-NM_001182830.2_FaliES1 cds-NP_014050.2_FaliES1 94.0 96.5 Verified 1 1 1 False True False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000096.1:6817-9843:- gene-YMR317W_JAY291 rna-NM_001182830.2_JAY291 cds-NP_014050.2_JAY291 87.0 88.4 Verified 1 1 1 False True False False False
MUCL30387 GCA_001738515.1 Bread Europe CM005419.1:885443-888362:+ gene-YMR317W_MUCL30387 rna-NM_001182830.2_MUCL30387 cds-NP_014050.2_MUCL30387 84.2 85.2 Unannotated 1 1 0 False False False True False
MUCL30388 GCA_001738495.1 Bread Europe CM005451.1:894930-898092:+ gene-YMR317W_MUCL30388 rna-NM_001182830.2_MUCL30388 cds-NP_014050.2_MUCL30388 87.3 90.5 Unannotated 1 1 0 False False False True False
MUCL39482 GCA_001738235.1 Sake Asia CM005291.1:880234-883590:+ gene-YMR317W_MUCL39482 rna-NM_001182830.2_MUCL39482 cds-NP_014050.2_MUCL39482 92.4 96.1 Unannotated 1 1 0 False False False False True
MUCL42920 GCA_001738485.1 Bread Europe CM005435.1:888546-892125:+ gene-YMR317W_MUCL42920 rna-NM_001182830.2_MUCL42920 cds-NP_014050.2_MUCL42920 89.7 99.3 Unannotated 1 1 0 False False False True False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011822.1:907318-910740:+ gene-YMR317W_NCIM3186 rna-NM_001182830.2_NCIM3186 cds-NP_014050.2_NCIM3186 93.0 100.0 Verified 1 1 1 False True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005275.1:879894-883344:+ gene-YMR317W_NCYC1407 rna-NM_001182830.2_NCYC1407 cds-NP_014050.2_NCYC1407 94.8 98.9 Unannotated 1 1 0 False False False True False
PE2H3 GCA_905220325.1 Bioethanol South America HG994152.1:895196-898654:+ gene-YMR317W_PE2H3 rna-NM_001182830.2_PE2H3 cds-NP_014050.2_PE2H3 95.8 100.0 Verified 1 1 1 False True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999884.1:891179-894493:+ gene-YMR317W_PE2H4 rna-NM_001182830.2_PE2H4 cds-NP_014050.2_PE2H4 94.6 96.8 Verified 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001145.3:907364-910786:+ gene-YMR317W_S288C rna-NM_001182830.2_S288C cds-NP_014050.2_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000036.1:85155-88397:+ gene-YMR317W_SA1 rna-NM_001182830.2_SA1 cds-NP_014050.2_SA1 93.0 94.7 Verified 1 1 1 False True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005499.1:881320-884688:+ gene-YMR317W_ThermosaccDry rna-NM_001182830.2_ThermosaccDry cds-NP_014050.2_ThermosaccDry 94.1 96.5 Verified 1 1 1 False True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005467.1:895048-898290:+ gene-YMR317W_VR1 rna-NM_001182830.2_VR1 cds-NP_014050.2_VR1 93.0 94.7 Verified 1 1 1 False True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000028.1:296536-299625:+ gene-YMR317W_ZTW1 rna-NM_001182830.2_ZTW1 cds-NP_014050.2_ZTW1 86.0 88.4 Verified 1 1 1 False True False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047499.1:900036-903386:+ gene-YMR317W_Sparadoxus rna-NM_001182830.2_Sparadoxus cds-NP_014050.2_Sparadoxus 74.2 95.2 Verified 1 1 1 False True False False False

Additional files