Gene name: YMR310C
Reference locus (S288C): YMR310C
Gene biotype: protein_coding
Description: Putative methyltransferase; predicted to be involved in ribosome biogenesis; green fluorescent protein (GFP)-fusion protein localizes to the nucleus; not an essential gene; YMR310C has a paralog, YGR283C, that arose from the whole genome duplication; Belongs to the class IV-like SAM-binding methyltransferase superfamily
Top 10 interactors (score): RCM1 (0.937); YGR283C (0.908); EFM2 (0.908); NIP7 (0.899); CBF5 (0.897); MRM1 (0.866); RPF2 (0.859); SFM1 (0.857); NHP2 (0.855); GAR1 (0.854); BMT5 (0.821); UTP18 (0.809); UTP25 (0.801); ERB1 (0.792); ARX1 (0.774); SDA1 (0.773); TRM3 (0.763); NOP2 (0.756); OMS1 (0.753); YTM1 (0.747)
Homologues (species, bitscore): C9orf114 (Homo sapiens, 62.4); D2Wsu81e (Mus musculus, 63.2); zgc:101748 (Danio rerio, 62.4); c9orf114 (Xenopus tropicalis, 73.6); CG12128 (Drosophila melanogaster, 66.6); AT5G19300 (Arabidopsis thaliana, 72.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:935276-936229:- | gene-YMR310C_AKU4011 | rna-NM_001182821.1_AKU4011 | cds-NP_014041.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:17982-18935:+ | gene-YMR310C_BG1 | rna-NM_001182821.1_BG1 | cds-NP_014041.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:880686-881639:- | gene-YMR310C_Bruggeman | rna-NM_001182821.1_Bruggeman | cds-NP_014041.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:883250-884203:- | gene-YMR310C_CAT1 | rna-NM_001182821.1_CAT1 | cds-NP_014041.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:867529-868482:- | gene-YMR310C_CBS1585 | rna-NM_001182821.1_CBS1585 | cds-NP_014041.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:889818-890771:- | gene-YMR310C_CBS436 | rna-NM_001182821.1_CBS436 | cds-NP_014041.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:978250-979203:- | gene-YMR310C_CBS6412 | rna-NM_001182821.1_CBS6412 | cds-NP_014041.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:866650-867603:- | gene-YMR310C_CBS6413 | rna-NM_001182821.1_CBS6413 | cds-NP_014041.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:890277-891230:- | gene-YMR310C_CENPK1137D | rna-NM_001182821.1_CENPK1137D | cds-NP_014041.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:927273-928226:- | gene-YMR310C_EthanolRed | rna-NM_001182821.1_EthanolRed | cds-NP_014041.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:873514-874467:- | gene-YMR310C_FaliES1 | rna-NM_001182821.1_FaliES1 | cds-NP_014041.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000096.1:20532-21485:+ | gene-YMR310C_JAY291 | rna-NM_001182821.1_JAY291 | cds-NP_014041.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:873798-874751:- | gene-YMR310C_MUCL30387 | rna-NM_001182821.1_MUCL30387 | cds-NP_014041.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:883289-884242:- | gene-YMR310C_MUCL30388 | rna-NM_001182821.1_MUCL30388 | cds-NP_014041.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:868590-869543:- | gene-YMR310C_MUCL39482 | rna-NM_001182821.1_MUCL39482 | cds-NP_014041.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:876901-877854:- | gene-YMR310C_MUCL42920 | rna-NM_001182821.1_MUCL42920 | cds-NP_014041.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:895670-896623:- | gene-YMR310C_NCIM3186 | rna-NM_001182821.1_NCIM3186 | cds-NP_014041.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:868250-869203:- | gene-YMR310C_NCYC1407 | rna-NM_001182821.1_NCYC1407 | cds-NP_014041.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:883553-884506:- | gene-YMR310C_PE2H3 | rna-NM_001182821.1_PE2H3 | cds-NP_014041.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:879535-880488:- | gene-YMR310C_PE2H4 | rna-NM_001182821.1_PE2H4 | cds-NP_014041.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:895716-896669:- | gene-YMR310C_S288C | rna-NM_001182821.1_S288C | cds-NP_014041.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000036.1:73512-74465:- | gene-YMR310C_SA1 | rna-NM_001182821.1_SA1 | cds-NP_014041.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:869669-870622:- | gene-YMR310C_ThermosaccDry | rna-NM_001182821.1_ThermosaccDry | cds-NP_014041.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:883405-884358:- | gene-YMR310C_VR1 | rna-NM_001182821.1_VR1 | cds-NP_014041.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000028.1:284892-285845:- | gene-YMR310C_ZTW1 | rna-NM_001182821.1_ZTW1 | cds-NP_014041.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:888332-889285:- | gene-YMR310C_Sparadoxus | rna-NM_001182821.1_Sparadoxus | cds-NP_014041.1_Sparadoxus | 88.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |