Gene name: YMR253C
Reference locus (S288C): YMR253C
Gene biotype: protein_coding
Description: Uncharacterized membrane protein YMR253C; Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern; YMR253C is not an essential gene
Top 10 interactors (score): YLR050C (0.894); YPL162C (0.89); NOC3 (0.843); ALK1 (0.745); PRY3 (0.745); TOS6 (0.745); PLC1 (0.711); TAF2 (0.707); HMS2 (0.693); MSS18 (0.672); USV1 (0.671); HUL4 (0.622); YDL183C (0.61); APP1 (0.596); RNH1 (0.588); PIG2 (0.51); GIP2 (0.51); HSL1 (0.457); CTF4 (0.455)
Homologues (species, bitscore): SLC35G1 (Homo sapiens, 95.9); Slc35g1 (Mus musculus, 89.4); SLC35G1 (Danio rerio, 122.5); slc35g1 (Xenopus tropicalis, 98.6); CG5281 (Drosophila melanogaster, 90.5); AT2G05755 (Arabidopsis thaliana, 66.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:815386-816630:- | gene-YMR253C_AKU4011 | rna-NM_001182760.1_AKU4011 | cds-NP_013980.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:137776-139020:+ | gene-YMR253C_BG1 | rna-NM_001182760.1_BG1 | cds-NP_013980.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:760611-761855:- | gene-YMR253C_Bruggeman | rna-NM_001182760.1_Bruggeman | cds-NP_013980.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:763634-764878:- | gene-YMR253C_CAT1 | rna-NM_001182760.1_CAT1 | cds-NP_013980.1_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:747635-748879:- | gene-YMR253C_CBS1585 | rna-NM_001182760.1_CBS1585 | cds-NP_013980.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:752657-753901:- | gene-YMR253C_CBS436 | rna-NM_001182760.1_CBS436 | cds-NP_013980.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:859199-860443:- | gene-YMR253C_CBS6412 | rna-NM_001182760.1_CBS6412 | cds-NP_013980.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:746746-747990:- | gene-YMR253C_CBS6413 | rna-NM_001182760.1_CBS6413 | cds-NP_013980.1_CBS6413 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:770314-771558:- | gene-YMR253C_CENPK1137D | rna-NM_001182760.1_CENPK1137D | cds-NP_013980.1_CENPK1137D | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:808084-809328:- | gene-YMR253C_EthanolRed | rna-NM_001182760.1_EthanolRed | cds-NP_013980.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:754111-755355:- | gene-YMR253C_FaliES1 | rna-NM_001182760.1_FaliES1 | cds-NP_013980.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000141.1:31172-32416:+ | gene-YMR253C_JAY291 | rna-NM_001182760.1_JAY291 | cds-NP_013980.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:754460-755704:- | gene-YMR253C_MUCL30387 | rna-NM_001182760.1_MUCL30387 | cds-NP_013980.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:763053-764297:- | gene-YMR253C_MUCL30388 | rna-NM_001182760.1_MUCL30388 | cds-NP_013980.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:748723-749967:- | gene-YMR253C_MUCL39482 | rna-NM_001182760.1_MUCL39482 | cds-NP_013980.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:756789-758033:- | gene-YMR253C_MUCL42920 | rna-NM_001182760.1_MUCL42920 | cds-NP_013980.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:775900-777144:- | gene-YMR253C_NCIM3186 | rna-NM_001182760.1_NCIM3186 | cds-NP_013980.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:748356-749600:- | gene-YMR253C_NCYC1407 | rna-NM_001182760.1_NCYC1407 | cds-NP_013980.1_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:758354-759598:- | gene-YMR253C_PE2H3 | rna-NM_001182760.1_PE2H3 | cds-NP_013980.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:759399-760643:- | gene-YMR253C_PE2H4 | rna-NM_001182760.1_PE2H4 | cds-NP_013980.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:775946-777190:- | gene-YMR253C_S288C | rna-NM_001182760.1_S288C | cds-NP_013980.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000002.1:31248-32492:+ | gene-YMR253C_SA1 | rna-NM_001182760.1_SA1 | cds-NP_013980.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:750280-751524:- | gene-YMR253C_ThermosaccDry | rna-NM_001182760.1_ThermosaccDry | cds-NP_013980.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:762887-764131:- | gene-YMR253C_VR1 | rna-NM_001182760.1_VR1 | cds-NP_013980.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000028.1:165478-166722:- | gene-YMR253C_ZTW1 | rna-NM_001182760.1_ZTW1 | cds-NP_013980.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:768670-769929:- | gene-YMR253C_Sparadoxus | rna-NM_001182760.1_Sparadoxus | cds-NP_013980.1_Sparadoxus | 89.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |