YMR247W-A (YMR247W-A)

Gene profile

Gene name: YMR247W-A
Reference locus (S288C): YMR247W-A
Gene biotype: protein_coding

Description: Uncharacterized protein YMR247W-A; Putative protein of unknown function; SWAT-GFP fusion protein localizes to the endoplasmic reticulum and vacuole, while mCherry fusion localizes to just the vacuole

Top 10 interactors (score): Unknown

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005307.1:808747-808890:+ gene-YMR247W-A_AKU4011 rna-NM_001184661.1_AKU4011 cds-NP_878148.1_AKU4011 97.2 100.0 Verified 1 1 1 False True False False False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000069.1:145598-145741:- gene-YMR247W-A_BG1 rna-NM_001184661.1_BG1 cds-NP_878148.1_BG1 99.3 100.0 Verified 1 1 1 False True False False False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005515.1:753960-754103:+ gene-YMR247W-A_Bruggeman rna-NM_001184661.1_Bruggeman cds-NP_878148.1_Bruggeman 100.0 100.0 Verified 1 1 1 True True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005531.1:756970-757113:+ gene-YMR247W-A_CAT1 rna-NM_001184661.1_CAT1 cds-NP_878148.1_CAT1 99.3 100.0 Verified 1 1 1 False True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005371.1:741007-741150:+ gene-YMR247W-A_CBS1585 rna-NM_001184661.1_CBS1585 cds-NP_878148.1_CBS1585 96.5 100.0 Verified 1 1 1 False True False False False
CBS436 GCA_001738355.1 Sake Asia CM005355.1:745993-746136:+ gene-YMR247W-A_CBS436 rna-NM_001184661.1_CBS436 cds-NP_878148.1_CBS436 100.0 100.0 Mismatch 1 1 1 True True False False False
CBS6412 GCA_001738345.1 Sake Asia CM005339.1:852564-852707:+ gene-YMR247W-A_CBS6412 rna-NM_001184661.1_CBS6412 cds-NP_878148.1_CBS6412 97.2 100.0 Mismatch 1 1 1 False True False False False
CBS6413 GCA_001738265.1 Sake Asia CM005323.1:740158-740301:+ gene-YMR247W-A_CBS6413 rna-NM_001184661.1_CBS6413 cds-NP_878148.1_CBS6413 97.2 100.0 Verified 1 1 1 False True False False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001534.1:763609-763752:+ gene-YMR247W-A_CENPK1137D rna-NM_001184661.1_CENPK1137D cds-NP_878148.1_CENPK1137D 96.5 100.0 Mismatch 1 1 1 False True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005486.1:801407-801550:+ gene-YMR247W-A_EthanolRed rna-NM_001184661.1_EthanolRed cds-NP_878148.1_EthanolRed 97.2 100.0 Verified 1 1 1 False True False False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005547.1:747432-747575:+ gene-YMR247W-A_FaliES1 rna-NM_001184661.1_FaliES1 cds-NP_878148.1_FaliES1 97.2 100.0 Verified 1 1 1 False True False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000141.1:38936-39079:- gene-YMR247W-A_JAY291 rna-NM_001184661.1_JAY291 cds-NP_878148.1_JAY291 99.3 100.0 Verified 1 1 1 False True False False False
MUCL30387 GCA_001738515.1 Bread Europe CM005419.1:747794-747937:+ gene-YMR247W-A_MUCL30387 rna-NM_001184661.1_MUCL30387 cds-NP_878148.1_MUCL30387 99.3 100.0 Verified 1 1 1 False True False False False
MUCL30388 GCA_001738495.1 Bread Europe CM005451.1:755722-755865:+ gene-YMR247W-A_MUCL30388 rna-NM_001184661.1_MUCL30388 cds-NP_878148.1_MUCL30388 100.0 100.0 Verified 1 1 1 True True False False False
MUCL39482 GCA_001738235.1 Sake Asia CM005291.1:742077-742220:+ gene-YMR247W-A_MUCL39482 rna-NM_001184661.1_MUCL39482 cds-NP_878148.1_MUCL39482 96.5 100.0 Verified 1 1 1 False True False False False
MUCL42920 GCA_001738485.1 Bread Europe CM005435.1:749498-749641:+ gene-YMR247W-A_MUCL42920 rna-NM_001184661.1_MUCL42920 cds-NP_878148.1_MUCL42920 100.0 100.0 Verified 1 1 1 True True False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011822.1:769237-769380:+ gene-YMR247W-A_NCIM3186 rna-NM_001184661.1_NCIM3186 cds-NP_878148.1_NCIM3186 96.5 100.0 Verified 1 1 1 False True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005275.1:741732-741875:+ gene-YMR247W-A_NCYC1407 rna-NM_001184661.1_NCYC1407 cds-NP_878148.1_NCYC1407 97.2 100.0 Verified 1 1 1 False True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994152.1:751689-751832:+ gene-YMR247W-A_PE2H3 rna-NM_001184661.1_PE2H3 cds-NP_878148.1_PE2H3 99.3 100.0 Verified 1 1 1 False True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999884.1:752734-752877:+ gene-YMR247W-A_PE2H4 rna-NM_001184661.1_PE2H4 cds-NP_878148.1_PE2H4 99.3 100.0 Verified 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001145.3:769283-769426:+ gene-YMR247W-A_S288C rna-NM_001184661.1_S288C cds-NP_878148.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000002.1:39050-39193:- gene-YMR247W-A_SA1 rna-NM_001184661.1_SA1 cds-NP_878148.1_SA1 99.3 100.0 Verified 1 1 1 False True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005499.1:743604-743747:+ gene-YMR247W-A_ThermosaccDry rna-NM_001184661.1_ThermosaccDry cds-NP_878148.1_ThermosaccDry 97.2 100.0 Verified 1 1 1 False True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005467.1:756222-756365:+ gene-YMR247W-A_VR1 rna-NM_001184661.1_VR1 cds-NP_878148.1_VR1 99.3 100.0 Verified 1 1 1 False True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000028.1:158808-158951:+ gene-YMR247W-A_ZTW1 rna-NM_001184661.1_ZTW1 cds-NP_878148.1_ZTW1 99.3 100.0 Verified 1 1 1 False True False False False

Additional files