Gene name: YMR1
Reference locus (S288C): YJR110W
Gene biotype: protein_coding
Description: Phosphatidylinositol-3-phosphatase YMR1; Phosphoinositide 3-phosphatase; Phosphatidylinositol 3-phosphate (PI3P) phosphatase; involved in various protein sorting pathways, including CVT targeting and endosome to vacuole transport; has similarity to the conserved myotubularin dual specificity phosphatase family; Belongs to the protein-tyrosine phosphatase family. Non-receptor class myotubularin subfamily
Top 10 interactors (score): SAC1 (0.99); FIG4 (0.989); INP52 (0.982); FAB1 (0.981); VPS34 (0.98); INP53 (0.971); STT4 (0.938); LSB6 (0.928); PIK1 (0.924); PIS1 (0.909); PLC1 (0.903); INP51 (0.892); INP54 (0.865); MTM1 (0.85); SDP1 (0.695); TEP1 (0.651); YVH1 (0.639); LSC2 (0.625); ATG21 (0.595); MRPL50 (0.575)
Homologues (species, bitscore): MTMR8 (Homo sapiens, 282.7); Mtmr6 (Mus musculus, 282.0); mtmr7b (Danio rerio, 278.1); mtmr7 (Xenopus tropicalis, 276.9); CG3530 (Drosophila melanogaster, 274.2); mtm-6 (Caenorhabditis elegans, 266.5); MTM2 (Arabidopsis thaliana, 236.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:605118-607184:+ | gene-YJR110W_AKU4011 | rna-NM_001181768.1_AKU4011 | cds-NP_012644.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:123-2189:- | gene-YJR110W_BG1 | rna-NM_001181768.1_BG1 | cds-NP_012644.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:620847-622913:+ | gene-YJR110W_Bruggeman | rna-NM_001181768.1_Bruggeman | cds-NP_012644.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:624610-626676:+ | gene-YJR110W_CAT1 | rna-NM_001181768.1_CAT1 | cds-NP_012644.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:617174-619240:+ | gene-YJR110W_CBS1585 | rna-NM_001181768.1_CBS1585 | cds-NP_012644.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:636049-638115:+ | gene-YJR110W_CBS436 | rna-NM_001181768.1_CBS436 | cds-NP_012644.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:604321-606387:+ | gene-YJR110W_CBS6412 | rna-NM_001181768.1_CBS6412 | cds-NP_012644.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:606582-608648:+ | gene-YJR110W_CBS6413 | rna-NM_001181768.1_CBS6413 | cds-NP_012644.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:615933-617999:+ | gene-YJR110W_CENPK1137D | rna-NM_001181768.1_CENPK1137D | cds-NP_012644.1_CENPK1137D | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:609536-611602:+ | gene-YJR110W_EthanolRed | rna-NM_001181768.1_EthanolRed | cds-NP_012644.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:621002-623068:+ | gene-YJR110W_FaliES1 | rna-NM_001181768.1_FaliES1 | cds-NP_012644.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000054.1:66066-68132:- | gene-YJR110W_JAY291 | rna-NM_001181768.1_JAY291 | cds-NP_012644.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:619679-621745:+ | gene-YJR110W_MUCL30387 | rna-NM_001181768.1_MUCL30387 | cds-NP_012644.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:617366-619432:+ | gene-YJR110W_MUCL30388 | rna-NM_001181768.1_MUCL30388 | cds-NP_012644.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:610642-612708:+ | gene-YJR110W_MUCL39482 | rna-NM_001181768.1_MUCL39482 | cds-NP_012644.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:615145-617211:+ | gene-YJR110W_MUCL42920 | rna-NM_001181768.1_MUCL42920 | cds-NP_012644.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:633594-635660:+ | gene-YJR110W_NCIM3186 | rna-NM_001181768.1_NCIM3186 | cds-NP_012644.1_NCIM3186 | 95.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:608200-610266:+ | gene-YJR110W_NCYC1407 | rna-NM_001181768.1_NCYC1407 | cds-NP_012644.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:626383-628449:+ | gene-YJR110W_PE2H3 | rna-NM_001181768.1_PE2H3 | cds-NP_012644.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:620072-622138:+ | gene-YJR110W_PE2H4 | rna-NM_001181768.1_PE2H4 | cds-NP_012644.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:633615-635681:+ | gene-YJR110W_S288C | rna-NM_001181768.1_S288C | cds-NP_012644.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000038.1:92457-94523:+ | gene-YJR110W_SA1 | rna-NM_001181768.1_SA1 | cds-NP_012644.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:614936-617002:+ | gene-YJR110W_ThermosaccDry | rna-NM_001181768.1_ThermosaccDry | cds-NP_012644.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:617327-619393:+ | gene-YJR110W_VR1 | rna-NM_001181768.1_VR1 | cds-NP_012644.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:594301-596367:+ | gene-YJR110W_ZTW1 | rna-NM_001181768.1_ZTW1 | cds-NP_012644.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:628504-630570:+ | gene-YJR110W_Sparadoxus | rna-NM_001181768.1_Sparadoxus | cds-NP_012644.1_Sparadoxus | 89.9 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |