YMR051C (YMR051C)

Gene profile

Gene name: YMR051C
Reference locus (S288C): YMR051C
Gene biotype: protein_coding

Description: Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag

Top 10 interactors (score): YBL113C (0.482); RAD10 (0.45); PAU4 (0.45); YKL177W (0.45); PAU12 (0.45)

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
CBS6412 GCA_001738345.1 Sake Asia MBVQ01000030.1:4-505:+ gene-YMR051C_CBS6412 rna-NM_001182548.1_CBS6412 cds-NP_013766.1_CBS6412 33.4 37.9 Mismatch 1 1 0 False False True False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable JH711473.1:1-709:+ gene-YMR051C_CENPK1137D rna-NM_001182548.1_CENPK1137D cds-NP_013766.1_CENPK1137D 53.5 53.5 Mismatch 1 1 0 False False True False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011817.1:547792-549228:- gene-YMR051C_NCIM3186 rna-NM_001182548.1_NCIM3186 cds-NP_013766.1_NCIM3186 91.9 100.0 Verified 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001145.3:377003-378325:- gene-YMR051C_S288C rna-NM_001182548.1_S288C cds-NP_013766.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False

Additional files