YMR050C (YMR050C)

Gene profile

Gene name: YMR050C
Reference locus (S288C): YMR050C
Gene biotype: protein_coding

Description: Transposon Ty1-MR2 Gag-Pol polyprotein; Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes

Top 10 interactors (score): Unknown

Homologues (species, bitscore): CRK8 (Arabidopsis thaliana, 99.0)

External links:
Saccharomyces genome database (SGD)
STRING database
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
CENPK1137D GCA_000269885.1 Laboratory Not Applicable JH711473.1:1-709:+ gene-YMR050C_CENPK1137D rna-NM_001182547.2_CENPK1137D cds-NP_013765.1_CENPK1137D 13.4 13.4 Mismatch 1 1 0 False False True False False
MUCL30388 GCA_001738495.1 Bread Europe MBVW01000146.1:1-719:+ gene-YMR050C_MUCL30388 rna-NM_001182547.2_MUCL30388 cds-NP_013765.1_MUCL30388 13.5 13.6 Mismatch 1 1 0 False False True False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011824.1:117889-123157:+ gene-YMR050C_NCIM3186 rna-NM_001182547.2_NCIM3186 cds-NP_013765.1_NCIM3186 80.7 100.0 Mismatch 1 1 0 False False True False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001145.3:373057-378325:- gene-YMR050C_S288C rna-NM_001182547.2_S288C cds-NP_013765.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False

Additional files