YMR046C (YMR046C)

Gene profile

Gene name: YMR046C
Reference locus (S288C): YMR046C
Gene biotype: protein_coding

Description: Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag

Top 10 interactors (score): YAR009C (0.711); YMR158C-A (0.619); YCR018C-A (0.603); ATP20 (0.575); UBX6 (0.565); PUP2 (0.499); SCL1 (0.485); ATP7 (0.453); DIT1 (0.451); FAT1 (0.45); VMA10 (0.45); PRE6 (0.45)

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia MBVO01000062.1:4206-4805:- gene-YMR046C_AKU4011 rna-NM_001182543.1_AKU4011 cds-NP_013760.1_AKU4011 45.2 45.3 Verified 1 1 0 False False True False False
Bruggeman GCA_001738585.1 Bread Not Applicable MBVY01000118.1:336-1579:- gene-YMR046C_Bruggeman rna-NM_001182543.1_Bruggeman cds-NP_013760.1_Bruggeman 84.9 93.1 Unannotated 1 1 0 False False True False False
CAT1 GCA_001738705.1 Bioethanol South America MBWC01000128.1:121-1443:+ gene-YMR046C_CAT1 rna-NM_001182543.1_CAT1 cds-NP_013760.1_CAT1 99.0 100.0 Verified 1 1 1 False True False False False
CBS1585 GCA_001738375.1 Sake Asia MBVS01000102.1:3918-4517:- gene-YMR046C_CBS1585 rna-NM_001182543.1_CBS1585 cds-NP_013760.1_CBS1585 45.2 45.3 Verified 1 1 0 False False True False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005538.1:950331-951660:- gene-YMR046C_FaliES1 rna-NM_001182543.1_FaliES1 cds-NP_013760.1_FaliES1 92.7 100.0 Verified 1 1 0 False False True False False
MUCL30387 GCA_001738515.1 Bread Europe MBVX01000271.1:2133-3454:- gene-YMR046C_MUCL30387 rna-NM_001182543.1_MUCL30387 cds-NP_013760.1_MUCL30387 90.7 99.0 Unannotated 1 1 0 False False False True False
MUCL39482 GCA_001738235.1 Sake Asia MBVN01000086.1:4178-5390:- gene-YMR046C_MUCL39482 rna-NM_001182543.1_MUCL39482 cds-NP_013760.1_MUCL39482 91.3 91.6 Unannotated 1 1 0 False False False True False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011822.1:361259-362581:- gene-YMR046C_NCIM3186 rna-NM_001182543.1_NCIM3186 cds-NP_013760.1_NCIM3186 90.0 100.0 Verified 1 1 0 False False False True False
PE2H3 GCA_905220325.1 Bioethanol South America HG994145.1:201785-203107:+ gene-YMR046C_PE2H3 rna-NM_001182543.1_PE2H3 cds-NP_013760.1_PE2H3 99.4 100.0 Verified 1 1 1 False True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999877.1:201333-202655:+ gene-YMR046C_PE2H4 rna-NM_001182543.1_PE2H4 cds-NP_013760.1_PE2H4 99.4 100.0 Verified 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001145.3:361305-362627:- gene-YMR046C_S288C rna-NM_001182543.1_S288C cds-NP_013760.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000138.1:4155-4377:+ gene-YMR046C_SA1 rna-NM_001182543.1_SA1 cds-NP_013760.1_SA1 15.6 16.6 Mismatch 1 1 0 False False False True False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005490.1:954616-955945:- gene-YMR046C_ThermosaccDry rna-NM_001182543.1_ThermosaccDry cds-NP_013760.1_ThermosaccDry 60.1 100.0 Verified 1 1 0 False False True False False
VR1 GCA_001738595.1 Bioethanol South America MBVZ01000260.1:530-1745:+ gene-YMR046C_VR1 rna-NM_001182543.1_VR1 cds-NP_013760.1_VR1 91.4 91.9 Verified 1 1 0 False False False True False

Additional files