Gene name: YMR045C
Reference locus (S288C): YMR045C
Gene biotype: protein_coding
Description: Transposon Ty1-MR1 Gag-Pol polyprotein; Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes
Top 10 interactors (score): Unknown
Homologues (species, bitscore): CRK8 (Arabidopsis thaliana, 96.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | MBVY01000266.1:3-598:+ | gene-YMR045C_Bruggeman | rna-NM_001182542.2_Bruggeman | cds-NP_013759.1_Bruggeman | 11.0 | 11.3 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | MBWC01000128.1:121-1620:+ | gene-YMR045C_CAT1 | rna-NM_001182542.2_CAT1 | cds-NP_013759.1_CAT1 | 28.2 | 28.4 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:950269-951647:- | gene-YMR045C_FaliES1 | rna-NM_001182542.2_FaliES1 | cds-NP_013759.1_FaliES1 | 24.4 | 26.1 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | MBVX01000284.1:111-1370:- | gene-YMR045C_MUCL30387 | rna-NM_001182542.2_MUCL30387 | cds-NP_013759.1_MUCL30387 | 23.8 | 23.9 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | MBVV01000022.1:1-1279:+ | gene-YMR045C_MUCL42920 | rna-NM_001182542.2_MUCL42920 | cds-NP_013759.1_MUCL42920 | 24.1 | 24.2 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994145.1:201785-207053:+ | gene-YMR045C_PE2H3 | rna-NM_001182542.2_PE2H3 | cds-NP_013759.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999877.1:201333-206601:+ | gene-YMR045C_PE2H4 | rna-NM_001182542.2_PE2H4 | cds-NP_013759.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:357359-362627:- | gene-YMR045C_S288C | rna-NM_001182542.2_S288C | cds-NP_013759.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:955085-955932:- | gene-YMR045C_ThermosaccDry | rna-NM_001182542.2_ThermosaccDry | cds-NP_013759.1_ThermosaccDry | 15.0 | 16.0 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | MBVZ01000260.1:530-1745:+ | gene-YMR045C_VR1 | rna-NM_001182542.2_VR1 | cds-NP_013759.1_VR1 | 22.9 | 23.0 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |