YMR001C-A (YMR001C-A)

Gene profile

Gene name: YMR001C-A
Reference locus (S288C): YMR001C-A
Gene biotype: protein_coding

Description: Uncharacterized protein YMR001C-A; Putative protein of unknown function

Top 10 interactors (score): SLK19 (0.448); SPO12 (0.444)

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005307.1:320964-321194:- gene-YMR001C-A_AKU4011 rna-NM_001184613.1_AKU4011 cds-NP_878140.1_AKU4011 100.0 100.0 Verified 1 1 1 True True False False False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000201.1:221687-221917:+ gene-YMR001C-A_BG1 rna-NM_001184613.1_BG1 cds-NP_878140.1_BG1 99.5 100.0 Verified 1 1 1 False True False False False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005515.1:260898-261128:- gene-YMR001C-A_Bruggeman rna-NM_001184613.1_Bruggeman cds-NP_878140.1_Bruggeman 99.5 100.0 Verified 1 1 1 False True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005531.1:263389-263619:- gene-YMR001C-A_CAT1 rna-NM_001184613.1_CAT1 cds-NP_878140.1_CAT1 99.5 100.0 Verified 1 1 1 False True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005371.1:253905-254135:- gene-YMR001C-A_CBS1585 rna-NM_001184613.1_CBS1585 cds-NP_878140.1_CBS1585 100.0 100.0 Verified 1 1 1 True True False False False
CBS436 GCA_001738355.1 Sake Asia CM005355.1:259435-259665:- gene-YMR001C-A_CBS436 rna-NM_001184613.1_CBS436 cds-NP_878140.1_CBS436 99.5 100.0 Mismatch 1 1 1 False True False False False
CBS6412 GCA_001738345.1 Sake Asia CM005339.1:367309-367539:- gene-YMR001C-A_CBS6412 rna-NM_001184613.1_CBS6412 cds-NP_878140.1_CBS6412 100.0 100.0 Mismatch 1 1 1 True True False False False
CBS6413 GCA_001738265.1 Sake Asia CM005323.1:253161-253391:- gene-YMR001C-A_CBS6413 rna-NM_001184613.1_CBS6413 cds-NP_878140.1_CBS6413 100.0 100.0 Verified 1 1 1 True True False False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001534.1:266078-266308:- gene-YMR001C-A_CENPK1137D rna-NM_001184613.1_CENPK1137D cds-NP_878140.1_CENPK1137D 100.0 100.0 Verified 1 1 1 True True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005483.1:253712-253942:- gene-YMR001C-A_EthanolRed rna-NM_001184613.1_EthanolRed cds-NP_878140.1_EthanolRed 100.0 100.0 Verified 1 1 1 True True False False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005547.1:256898-257128:- gene-YMR001C-A_FaliES1 rna-NM_001184613.1_FaliES1 cds-NP_878140.1_FaliES1 100.0 100.0 Verified 1 1 1 True True False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000033.1:179820-180050:+ gene-YMR001C-A_JAY291 rna-NM_001184613.1_JAY291 cds-NP_878140.1_JAY291 99.5 100.0 Verified 1 1 1 False True False False False
MUCL30387 GCA_001738515.1 Bread Europe CM005419.1:258626-258856:- gene-YMR001C-A_MUCL30387 rna-NM_001184613.1_MUCL30387 cds-NP_878140.1_MUCL30387 99.5 100.0 Verified 1 1 1 False True False False False
MUCL30388 GCA_001738495.1 Bread Europe CM005451.1:263288-263518:- gene-YMR001C-A_MUCL30388 rna-NM_001184613.1_MUCL30388 cds-NP_878140.1_MUCL30388 99.5 100.0 Verified 1 1 1 False True False False False
MUCL39482 GCA_001738235.1 Sake Asia CM005291.1:254190-254420:- gene-YMR001C-A_MUCL39482 rna-NM_001184613.1_MUCL39482 cds-NP_878140.1_MUCL39482 100.0 100.0 Verified 1 1 1 True True False False False
MUCL42920 GCA_001738485.1 Bread Europe CM005435.1:259742-259972:- gene-YMR001C-A_MUCL42920 rna-NM_001184613.1_MUCL42920 cds-NP_878140.1_MUCL42920 99.5 100.0 Verified 1 1 1 False True False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011822.1:271301-271531:- gene-YMR001C-A_NCIM3186 rna-NM_001184613.1_NCIM3186 cds-NP_878140.1_NCIM3186 93.5 100.0 Verified 1 1 0 False False False True False
NCYC1407 GCA_001738225.1 Sake Asia CM005275.1:254107-254337:- gene-YMR001C-A_NCYC1407 rna-NM_001184613.1_NCYC1407 cds-NP_878140.1_NCYC1407 100.0 100.0 Verified 1 1 1 True True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994152.1:260023-260253:- gene-YMR001C-A_PE2H3 rna-NM_001184613.1_PE2H3 cds-NP_878140.1_PE2H3 99.5 100.0 Verified 1 1 1 False True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999884.1:266118-266348:- gene-YMR001C-A_PE2H4 rna-NM_001184613.1_PE2H4 cds-NP_878140.1_PE2H4 99.5 100.0 Verified 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001145.3:271347-271577:- gene-YMR001C-A_S288C rna-NM_001184613.1_S288C cds-NP_878140.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000005.1:266707-266937:+ gene-YMR001C-A_SA1 rna-NM_001184613.1_SA1 cds-NP_878140.1_SA1 99.5 100.0 Verified 1 1 1 False True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005499.1:253963-254193:- gene-YMR001C-A_ThermosaccDry rna-NM_001184613.1_ThermosaccDry cds-NP_878140.1_ThermosaccDry 100.0 100.0 Verified 1 1 1 True True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005467.1:257910-258140:- gene-YMR001C-A_VR1 rna-NM_001184613.1_VR1 cds-NP_878140.1_VR1 99.5 100.0 Verified 1 1 1 False True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000027.1:233015-233245:- gene-YMR001C-A_ZTW1 rna-NM_001184613.1_ZTW1 cds-NP_878140.1_ZTW1 100.0 100.0 Verified 1 1 1 True True False False False

Additional files