Gene name: YML6
Reference locus (S288C): YML025C
Gene biotype: protein_coding
Description: Mitochondrial ribosomal protein of the large subunit; has similarity to E. coli L4 ribosomal protein and human mitoribosomal MRP-L4 protein; essential for viability, unlike most other mitoribosomal proteins
Top 10 interactors (score): RSM23 (0.999); MRPL9 (0.999); MRPL19 (0.999); MRPL28 (0.999); MRPL16 (0.999); MRPS28 (0.999); MRPL23 (0.999); MRPL51 (0.999); MRPL22 (0.999); MRPL17 (0.999); RSM18 (0.999); IMG1 (0.999); MRPS5 (0.999); MRPL3 (0.999); MRPL4 (0.999); MRPL8 (0.999); MRP7 (0.999); MRPS16 (0.999); MRPS9 (0.999); MNP1 (0.999)
Homologues (species, bitscore): MRPL4 (Homo sapiens, 55.1); Mrpl4 (Mus musculus, 57.4); zgmrpl4 (Danio rerio, 56.6); mrpl4 (Xenopus tropicalis, 58.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:274000-274959:- | gene-YML025C_AKU4011 | rna-NM_001182383.1_AKU4011 | cds-NP_013687.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:267914-268873:+ | gene-YML025C_BG1 | rna-NM_001182383.1_BG1 | cds-NP_013687.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:213952-214911:- | gene-YML025C_Bruggeman | rna-NM_001182383.1_Bruggeman | cds-NP_013687.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:216465-217424:- | gene-YML025C_CAT1 | rna-NM_001182383.1_CAT1 | cds-NP_013687.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:206949-207908:- | gene-YML025C_CBS1585 | rna-NM_001182383.1_CBS1585 | cds-NP_013687.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:212485-213444:- | gene-YML025C_CBS436 | rna-NM_001182383.1_CBS436 | cds-NP_013687.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:320686-321645:- | gene-YML025C_CBS6412 | rna-NM_001182383.1_CBS6412 | cds-NP_013687.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:206207-207166:- | gene-YML025C_CBS6413 | rna-NM_001182383.1_CBS6413 | cds-NP_013687.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:218928-219887:- | gene-YML025C_CENPK1137D | rna-NM_001182383.1_CENPK1137D | cds-NP_013687.1_CENPK1137D | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:206975-207934:- | gene-YML025C_EthanolRed | rna-NM_001182383.1_EthanolRed | cds-NP_013687.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:209939-210898:- | gene-YML025C_FaliES1 | rna-NM_001182383.1_FaliES1 | cds-NP_013687.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000237.1:1240-2199:+ | gene-YML025C_JAY291 | rna-NM_001182383.1_JAY291 | cds-NP_013687.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:211684-212643:- | gene-YML025C_MUCL30387 | rna-NM_001182383.1_MUCL30387 | cds-NP_013687.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:215661-216620:- | gene-YML025C_MUCL30388 | rna-NM_001182383.1_MUCL30388 | cds-NP_013687.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:207235-208194:- | gene-YML025C_MUCL39482 | rna-NM_001182383.1_MUCL39482 | cds-NP_013687.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:212790-213749:- | gene-YML025C_MUCL42920 | rna-NM_001182383.1_MUCL42920 | cds-NP_013687.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:224360-225319:- | gene-YML025C_NCIM3186 | rna-NM_001182383.1_NCIM3186 | cds-NP_013687.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:207176-208135:- | gene-YML025C_NCYC1407 | rna-NM_001182383.1_NCYC1407 | cds-NP_013687.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:213076-214035:- | gene-YML025C_PE2H3 | rna-NM_001182383.1_PE2H3 | cds-NP_013687.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:219171-220130:- | gene-YML025C_PE2H4 | rna-NM_001182383.1_PE2H4 | cds-NP_013687.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:224406-225365:- | gene-YML025C_S288C | rna-NM_001182383.1_S288C | cds-NP_013687.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000088.1:13486-14445:+ | gene-YML025C_SA1 | rna-NM_001182383.1_SA1 | cds-NP_013687.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:207012-207971:- | gene-YML025C_ThermosaccDry | rna-NM_001182383.1_ThermosaccDry | cds-NP_013687.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:211017-211976:- | gene-YML025C_VR1 | rna-NM_001182383.1_VR1 | cds-NP_013687.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:186066-187025:- | gene-YML025C_ZTW1 | rna-NM_001182383.1_ZTW1 | cds-NP_013687.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:217776-218736:- | gene-YML025C_Sparadoxus | rna-NM_001182383.1_Sparadoxus | cds-NP_013687.1_Sparadoxus | 91.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |