Gene name: YML082W
Reference locus (S288C): YML082W
Gene biotype: protein_coding
Description: Putative cystathionine gamma-synthase YML082W; Putative protein predicted to have carbon-sulfur lyase activity; transcriptionally regulated by Upc2p via an upstream sterol response element; green fluorescent protein (GFP)-fusion protein localizes to the nucleus and the cytoplasm; not an essential gene; YML082W has a paralog, STR2, that arose from the whole genome duplication
Top 10 interactors (score): MET6 (0.966); CYS4 (0.966); MET2 (0.963); MCY1 (0.95); IRC7 (0.942); STR3 (0.936); SAH1 (0.934); CYS3 (0.931); MET5 (0.918); SAM4 (0.915); MHT1 (0.915); BAT2 (0.911); YLL058W (0.911); BAT1 (0.911); MET17 (0.909); STR2 (0.905); MET10 (0.904); THR1 (0.898); TUM1 (0.882); HOM6 (0.848)
Homologues (species, bitscore): Cth (Mus musculus, 57.4); Eip55E (Drosophila melanogaster, 63.2); cth-1 (Caenorhabditis elegans, 55.5); MTO1 (Arabidopsis thaliana, 61.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:95584-97533:+ | gene-YML082W_AKU4011 | rna-NM_001182441.1_AKU4011 | cds-NP_013628.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:378580-380547:- | gene-YML082W_BG1 | rna-NM_001182441.1_BG1 | cds-NP_013628.1_BG1 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:101752-103701:+ | gene-YML082W_Bruggeman | rna-NM_001182441.1_Bruggeman | cds-NP_013628.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:103429-105378:+ | gene-YML082W_CAT1 | rna-NM_001182441.1_CAT1 | cds-NP_013628.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:95591-97540:+ | gene-YML082W_CBS1585 | rna-NM_001182441.1_CBS1585 | cds-NP_013628.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:101521-103470:+ | gene-YML082W_CBS436 | rna-NM_001182441.1_CBS436 | cds-NP_013628.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:96301-98250:+ | gene-YML082W_CBS6412 | rna-NM_001182441.1_CBS6412 | cds-NP_013628.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:94774-96723:+ | gene-YML082W_CBS6413 | rna-NM_001182441.1_CBS6413 | cds-NP_013628.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:96569-98518:+ | gene-YML082W_CENPK1137D | rna-NM_001182441.1_CENPK1137D | cds-NP_013628.1_CENPK1137D | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:95860-97809:+ | gene-YML082W_EthanolRed | rna-NM_001182441.1_EthanolRed | cds-NP_013628.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:96369-98318:+ | gene-YML082W_FaliES1 | rna-NM_001182441.1_FaliES1 | cds-NP_013628.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000366.1:58770-60737:- | gene-YML082W_JAY291 | rna-NM_001182441.1_JAY291 | cds-NP_013628.1_JAY291 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:100276-102225:+ | gene-YML082W_MUCL30387 | rna-NM_001182441.1_MUCL30387 | cds-NP_013628.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:103422-105371:+ | gene-YML082W_MUCL30388 | rna-NM_001182441.1_MUCL30388 | cds-NP_013628.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:95602-97551:+ | gene-YML082W_MUCL39482 | rna-NM_001182441.1_MUCL39482 | cds-NP_013628.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:100332-102281:+ | gene-YML082W_MUCL42920 | rna-NM_001182441.1_MUCL42920 | cds-NP_013628.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:101816-103765:+ | gene-YML082W_NCIM3186 | rna-NM_001182441.1_NCIM3186 | cds-NP_013628.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:96399-98348:+ | gene-YML082W_NCYC1407 | rna-NM_001182441.1_NCYC1407 | cds-NP_013628.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:101760-103709:+ | gene-YML082W_PE2H3 | rna-NM_001182441.1_PE2H3 | cds-NP_013628.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:101698-103647:+ | gene-YML082W_PE2H4 | rna-NM_001182441.1_PE2H4 | cds-NP_013628.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:101862-103811:+ | gene-YML082W_S288C | rna-NM_001182441.1_S288C | cds-NP_013628.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000041.1:80438-82405:- | gene-YML082W_SA1 | rna-NM_001182441.1_SA1 | cds-NP_013628.1_SA1 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:95661-97610:+ | gene-YML082W_ThermosaccDry | rna-NM_001182441.1_ThermosaccDry | cds-NP_013628.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:100049-101998:+ | gene-YML082W_VR1 | rna-NM_001182441.1_VR1 | cds-NP_013628.1_VR1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:75194-77143:+ | gene-YML082W_ZTW1 | rna-NM_001182441.1_ZTW1 | cds-NP_013628.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:106360-108309:+ | gene-YML082W_Sparadoxus | rna-NM_001182441.1_Sparadoxus | cds-NP_013628.1_Sparadoxus | 91.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |