YML053C (YML053C)


Gene profile

Gene name: YML053C
Reference locus (S288C): YML053C
Gene biotype: protein_coding

Description: Uncharacterized protein YML053C; Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and the nucleus; overexpression causes a cell cycle delay or arrest; YML053C is not an essential gene

Top 10 interactors (score): TDA7 (0.746); YBR138C (0.696); TDH2 (0.659); IRC8 (0.655); ERS1 (0.612); TEL2 (0.612); EGO2 (0.572); ADD37 (0.569); YPI1 (0.564); PCL6 (0.534); DIN7 (0.528); ALG5 (0.527); FKH1 (0.526); SUR7 (0.523); VAR1 (0.499); SPC24 (0.499); SCO1 (0.482); PPN1 (0.48); NEW1 (0.458); DSE1 (0.453)

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser


Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005307.1:162497-163135:- gene-YML053C_AKU4011 rna-NM_001182411.1_AKU4011 cds-NP_013659.1_AKU4011 99.8 100.0 Verified 1 1 1 False True False False False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000201.1:312704-313318:+ gene-YML053C_BG1 rna-NM_001182411.1_BG1 cds-NP_013659.1_BG1 95.9 96.2 Verified 1 1 1 False True False False False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005515.1:168620-169249:- gene-YML053C_Bruggeman rna-NM_001182411.1_Bruggeman cds-NP_013659.1_Bruggeman 98.2 98.5 Verified 1 1 1 False True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005531.1:172120-172749:- gene-YML053C_CAT1 rna-NM_001182411.1_CAT1 cds-NP_013659.1_CAT1 98.2 98.5 Verified 1 1 1 False True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005371.1:163280-163897:- gene-YML053C_CBS1585 rna-NM_001182411.1_CBS1585 cds-NP_013659.1_CBS1585 96.4 96.7 Verified 1 1 1 False True False False False
CBS436 GCA_001738355.1 Sake Asia CM005355.1:168410-169039:- gene-YML053C_CBS436 rna-NM_001182411.1_CBS436 cds-NP_013659.1_CBS436 98.1 98.5 Mismatch 1 1 1 False True False False False
CBS6412 GCA_001738345.1 Sake Asia CM005339.1:277078-277695:- gene-YML053C_CBS6412 rna-NM_001182411.1_CBS6412 cds-NP_013659.1_CBS6412 96.2 96.7 Mismatch 1 1 1 False True False False False
CBS6413 GCA_001738265.1 Sake Asia CM005323.1:162592-163209:- gene-YML053C_CBS6413 rna-NM_001182411.1_CBS6413 cds-NP_013659.1_CBS6413 96.4 96.7 Verified 1 1 1 False True False False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001534.1:175319-175957:- gene-YML053C_CENPK1137D rna-NM_001182411.1_CENPK1137D cds-NP_013659.1_CENPK1137D 100.0 100.0 Verified 1 1 1 True True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005483.1:163378-164016:- gene-YML053C_EthanolRed rna-NM_001182411.1_EthanolRed cds-NP_013659.1_EthanolRed 100.0 100.0 Verified 1 1 1 True True False False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005547.1:163923-164561:- gene-YML053C_FaliES1 rna-NM_001182411.1_FaliES1 cds-NP_013659.1_FaliES1 100.0 100.0 Verified 1 1 1 True True False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000172.1:14280-14894:+ gene-YML053C_JAY291 rna-NM_001182411.1_JAY291 cds-NP_013659.1_JAY291 95.9 96.2 Verified 1 1 1 False True False False False
MUCL30387 GCA_001738515.1 Bread Europe CM005419.1:167159-167788:- gene-YML053C_MUCL30387 rna-NM_001182411.1_MUCL30387 cds-NP_013659.1_MUCL30387 97.9 98.5 Verified 1 1 1 False True False False False
MUCL30388 GCA_001738495.1 Bread Europe CM005451.1:171233-171871:- gene-YML053C_MUCL30388 rna-NM_001182411.1_MUCL30388 cds-NP_013659.1_MUCL30388 99.6 100.0 Verified 1 1 1 False True False False False
MUCL39482 GCA_001738235.1 Sake Asia CM005291.1:163605-164243:- gene-YML053C_MUCL39482 rna-NM_001182411.1_MUCL39482 cds-NP_013659.1_MUCL39482 99.8 100.0 Verified 1 1 1 False True False False False
MUCL42920 GCA_001738485.1 Bread Europe CM005435.1:168335-168964:- gene-YML053C_MUCL42920 rna-NM_001182411.1_MUCL42920 cds-NP_013659.1_MUCL42920 98.2 98.5 Verified 1 1 1 False True False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011822.1:169070-169708:- gene-YML053C_NCIM3186 rna-NM_001182411.1_NCIM3186 cds-NP_013659.1_NCIM3186 99.3 100.0 Verified 1 1 1 False True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005275.1:163587-164204:- gene-YML053C_NCYC1407 rna-NM_001182411.1_NCYC1407 cds-NP_013659.1_NCYC1407 96.4 96.7 Verified 1 1 1 False True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994152.1:169077-169706:- gene-YML053C_PE2H3 rna-NM_001182411.1_PE2H3 cds-NP_013659.1_PE2H3 98.2 98.5 Verified 1 1 1 False True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999884.1:169277-169891:- gene-YML053C_PE2H4 rna-NM_001182411.1_PE2H4 cds-NP_013659.1_PE2H4 95.9 96.2 Verified 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001145.3:169116-169754:- gene-YML053C_S288C rna-NM_001182411.1_S288C cds-NP_013659.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000041.1:14390-15004:+ gene-YML053C_SA1 rna-NM_001182411.1_SA1 cds-NP_013659.1_SA1 95.9 96.2 Verified 1 1 1 False True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005499.1:163425-164063:- gene-YML053C_ThermosaccDry rna-NM_001182411.1_ThermosaccDry cds-NP_013659.1_ThermosaccDry 100.0 100.0 Verified 1 1 1 True True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005467.1:166883-167512:- gene-YML053C_VR1 rna-NM_001182411.1_VR1 cds-NP_013659.1_VR1 98.2 98.5 Verified 1 1 1 False True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000027.1:142457-143096:- gene-YML053C_ZTW1 rna-NM_001182411.1_ZTW1 cds-NP_013659.1_ZTW1 99.8 100.0 Unannotated 1 1 0 False False False True False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047499.1:174055-174687:- gene-YML053C_Sparadoxus rna-NM_001182411.1_Sparadoxus cds-NP_013659.1_Sparadoxus 83.5 97.3 Mismatch 1 1 1 False True False False False

Additional files