Gene name: YML045W
Reference locus (S288C): YML045W
Gene biotype: protein_coding
Description: Transposon Ty1-ML1 Gag-Pol polyprotein; Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes
Top 10 interactors (score): ATP20 (0.677); UBX6 (0.618); PUP2 (0.573); SCL1 (0.569); ATP7 (0.559); DIT1 (0.527); FAT1 (0.526); PRE6 (0.524); VMA10 (0.521); PRE4 (0.499); ATP14 (0.483); ECM4 (0.483); VMA8 (0.481); SBA1 (0.454); ADH6 (0.453); YGP1 (0.45); TAT1 (0.404)
Homologues (species, bitscore): CRK8 (Arabidopsis thaliana, 95.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | MBVY01000303.1:1-566:+ | gene-YML045W_Bruggeman | rna-NM_001182402.2_Bruggeman | cds-NP_013668.1_Bruggeman | 10.7 | 10.7 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | MBWC01000063.1:1-771:+ | gene-YML045W_CAT1 | rna-NM_001182402.2_CAT1 | cds-NP_013668.1_CAT1 | 14.6 | 14.6 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000308.1:1-319:+ | gene-YML045W_JAY291 | rna-NM_001182402.2_JAY291 | cds-NP_013668.1_JAY291 | 6.0 | 6.0 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | MBVW01000239.1:1-843:+ | gene-YML045W_MUCL30388 | rna-NM_001182402.2_MUCL30388 | cds-NP_013668.1_MUCL30388 | 16.0 | 16.0 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | MBVV01000075.1:1-537:+ | gene-YML045W_MUCL42920 | rna-NM_001182402.2_MUCL42920 | cds-NP_013668.1_MUCL42920 | 10.1 | 10.1 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994142.1:151923-157191:- | gene-YML045W_PE2H3 | rna-NM_001182402.2_PE2H3 | cds-NP_013668.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:184704-189972:- | gene-YML045W_PE2H4 | rna-NM_001182402.2_PE2H4 | cds-NP_013668.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:184461-189729:+ | gene-YML045W_S288C | rna-NM_001182402.2_S288C | cds-NP_013668.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | MBVZ01000071.1:1-791:+ | gene-YML045W_VR1 | rna-NM_001182402.2_VR1 | cds-NP_013668.1_VR1 | 15.0 | 15.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |