YML040W (YML040W)

Gene profile

Gene name: YML040W
Reference locus (S288C): YML040W
Gene biotype: protein_coding

Description: Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag

Top 10 interactors (score): YAR009C (0.711); ATP20 (0.575); UBX6 (0.565); PUP2 (0.499); SCL1 (0.485); ATP7 (0.453); DIT1 (0.451); FAT1 (0.45); VMA10 (0.45); PRE6 (0.45)

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011821.1:651091-652413:+ gene-YML040W_NCIM3186 rna-NM_001182398.1_NCIM3186 cds-NP_013673.1_NCIM3186 71.9 100.0 Mismatch 1 1 0 False False True False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999885.1:552208-553530:- gene-YML040W_PE2H4 rna-NM_001182398.1_PE2H4 cds-NP_013673.1_PE2H4 99.4 100.0 Mismatch 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001145.3:196628-197950:+ gene-YML040W_S288C rna-NM_001182398.1_S288C cds-NP_013673.1_S288C 100.0 100.0 Mismatch 1 1 1 True True False False False
VR1 GCA_001738595.1 Bioethanol South America MBVZ01000056.1:1-1048:+ gene-YML040W_VR1 rna-NM_001182398.1_VR1 cds-NP_013673.1_VR1 79.2 79.2 Unannotated 1 1 0 False False True False False

Additional files