Gene name: YML040W
Reference locus (S288C): YML040W
Gene biotype: protein_coding
Description: Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag
Top 10 interactors (score): YAR009C (0.711); ATP20 (0.575); UBX6 (0.565); PUP2 (0.499); SCL1 (0.485); ATP7 (0.453); DIT1 (0.451); FAT1 (0.45); VMA10 (0.45); PRE6 (0.45)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:651091-652413:+ | gene-YML040W_NCIM3186 | rna-NM_001182398.1_NCIM3186 | cds-NP_013673.1_NCIM3186 | 71.9 | 100.0 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:552208-553530:- | gene-YML040W_PE2H4 | rna-NM_001182398.1_PE2H4 | cds-NP_013673.1_PE2H4 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:196628-197950:+ | gene-YML040W_S288C | rna-NM_001182398.1_S288C | cds-NP_013673.1_S288C | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | MBVZ01000056.1:1-1048:+ | gene-YML040W_VR1 | rna-NM_001182398.1_VR1 | cds-NP_013673.1_VR1 | 79.2 | 79.2 | Unannotated | 1 | 1 | 0 | False | False | True | False | False |