YML039W (YML039W)

Gene profile

Gene name: YML039W
Reference locus (S288C): YML039W
Gene biotype: protein_coding

Description: Transposon Ty1-ML2 Gag-Pol polyprotein; Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes

Top 10 interactors (score): Unknown

Homologues (species, bitscore): CRK8 (Arabidopsis thaliana, 91.3)

External links:
Saccharomyces genome database (SGD)
STRING database
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
S288C GCF_000146045.2 Laboratory Not applicable NC_001145.3:196628-201896:+ gene-YML039W_S288C rna-NM_001182397.2_S288C cds-NP_013672.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
VR1 GCA_001738595.1 Bioethanol South America MBVZ01000056.1:1-1293:+ gene-YML039W_VR1 rna-NM_001182397.2_VR1 cds-NP_013672.1_VR1 24.4 24.5 Unannotated 1 1 0 False False True False False

Additional files