YML003W (YML003W)

Gene profile

Gene name: YML003W
Reference locus (S288C): YML003W
Gene biotype: protein_coding

Description: UPF0507 protein YML003W; Putative protein of unknown function; Belongs to the UPF0507 family

Top 10 interactors (score): YML002W (0.98); GIS4 (0.813); MUK1 (0.813); TRM12 (0.748); VPS9 (0.74); GLO1 (0.698); YPT7 (0.524)

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005307.1:313056-313929:+ gene-YML003W_AKU4011 rna-NM_001182358.1_AKU4011 cds-NP_013711.1_AKU4011 99.8 100.0 Verified 1 1 0 False False False True False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000201.1:228894-229767:- gene-YML003W_BG1 rna-NM_001182358.1_BG1 cds-NP_013711.1_BG1 99.8 100.0 Verified 1 1 0 False False False True False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005515.1:253026-253899:+ gene-YML003W_Bruggeman rna-NM_001182358.1_Bruggeman cds-NP_013711.1_Bruggeman 99.7 100.0 Verified 1 1 0 False False False True False
CAT1 GCA_001738705.1 Bioethanol South America CM005531.1:255539-256412:+ gene-YML003W_CAT1 rna-NM_001182358.1_CAT1 cds-NP_013711.1_CAT1 99.8 100.0 Verified 1 1 0 False False False True False
CBS1585 GCA_001738375.1 Sake Asia CM005371.1:246035-246908:+ gene-YML003W_CBS1585 rna-NM_001182358.1_CBS1585 cds-NP_013711.1_CBS1585 99.8 100.0 Verified 1 1 0 False False False True False
CBS436 GCA_001738355.1 Sake Asia CM005355.1:251567-252440:+ gene-YML003W_CBS436 rna-NM_001182358.1_CBS436 cds-NP_013711.1_CBS436 99.8 100.0 Mismatch 1 1 0 False False False True False
CBS6412 GCA_001738345.1 Sake Asia CM005339.1:359804-360677:+ gene-YML003W_CBS6412 rna-NM_001182358.1_CBS6412 cds-NP_013711.1_CBS6412 99.8 100.0 Mismatch 1 1 0 False False False True False
CBS6413 GCA_001738265.1 Sake Asia CM005323.1:245290-246163:+ gene-YML003W_CBS6413 rna-NM_001182358.1_CBS6413 cds-NP_013711.1_CBS6413 99.8 100.0 Verified 1 1 0 False False False True False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001534.1:258214-259086:+ gene-YML003W_CENPK1137D rna-NM_001182358.1_CENPK1137D cds-NP_013711.1_CENPK1137D 100.0 100.0 Verified 1 1 1 True True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005483.1:246070-246943:+ gene-YML003W_EthanolRed rna-NM_001182358.1_EthanolRed cds-NP_013711.1_EthanolRed 99.8 100.0 Verified 1 1 0 False False False True False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005547.1:249035-249908:+ gene-YML003W_FaliES1 rna-NM_001182358.1_FaliES1 cds-NP_013711.1_FaliES1 99.8 100.0 Verified 1 1 0 False False False True False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000033.1:187027-187900:- gene-YML003W_JAY291 rna-NM_001182358.1_JAY291 cds-NP_013711.1_JAY291 99.8 100.0 Verified 1 1 0 False False False True False
MUCL30387 GCA_001738515.1 Bread Europe CM005419.1:250754-251627:+ gene-YML003W_MUCL30387 rna-NM_001182358.1_MUCL30387 cds-NP_013711.1_MUCL30387 99.7 100.0 Verified 1 1 0 False False False True False
MUCL30388 GCA_001738495.1 Bread Europe CM005451.1:255420-256293:+ gene-YML003W_MUCL30388 rna-NM_001182358.1_MUCL30388 cds-NP_013711.1_MUCL30388 99.7 100.0 Verified 1 1 0 False False False True False
MUCL39482 GCA_001738235.1 Sake Asia CM005291.1:246315-247188:+ gene-YML003W_MUCL39482 rna-NM_001182358.1_MUCL39482 cds-NP_013711.1_MUCL39482 99.8 100.0 Verified 1 1 0 False False False True False
MUCL42920 GCA_001738485.1 Bread Europe CM005435.1:251870-252743:+ gene-YML003W_MUCL42920 rna-NM_001182358.1_MUCL42920 cds-NP_013711.1_MUCL42920 99.8 100.0 Verified 1 1 0 False False False True False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011822.1:263437-264309:+ gene-YML003W_NCIM3186 rna-NM_001182358.1_NCIM3186 cds-NP_013711.1_NCIM3186 99.6 100.0 Verified 1 1 1 False True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005275.1:246250-247123:+ gene-YML003W_NCYC1407 rna-NM_001182358.1_NCYC1407 cds-NP_013711.1_NCYC1407 99.8 100.0 Verified 1 1 0 False False False True False
PE2H3 GCA_905220325.1 Bioethanol South America HG994152.1:252173-253046:+ gene-YML003W_PE2H3 rna-NM_001182358.1_PE2H3 cds-NP_013711.1_PE2H3 99.8 100.0 Verified 1 1 0 False False False True False
PE2H4 GCA_905220315.1 Bioethanol South America LR999884.1:258268-259141:+ gene-YML003W_PE2H4 rna-NM_001182358.1_PE2H4 cds-NP_013711.1_PE2H4 99.8 100.0 Verified 1 1 0 False False False True False
S288C GCF_000146045.2 Laboratory Not applicable NC_001145.3:263483-264355:+ gene-YML003W_S288C rna-NM_001182358.1_S288C cds-NP_013711.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000005.1:273914-274787:- gene-YML003W_SA1 rna-NM_001182358.1_SA1 cds-NP_013711.1_SA1 99.8 100.0 Verified 1 1 0 False False False True False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005499.1:246098-246971:+ gene-YML003W_ThermosaccDry rna-NM_001182358.1_ThermosaccDry cds-NP_013711.1_ThermosaccDry 99.8 100.0 Verified 1 1 0 False False False True False
VR1 GCA_001738595.1 Bioethanol South America CM005467.1:250060-250933:+ gene-YML003W_VR1 rna-NM_001182358.1_VR1 cds-NP_013711.1_VR1 99.8 100.0 Verified 1 1 0 False False False True False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000027.1:225141-226014:+ gene-YML003W_ZTW1 rna-NM_001182358.1_ZTW1 cds-NP_013711.1_ZTW1 99.8 100.0 Verified 1 1 0 False False False True False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047499.1:257546-258419:+ gene-YML003W_Sparadoxus rna-NM_001182358.1_Sparadoxus cds-NP_013711.1_Sparadoxus 89.4 99.7 Verified 1 1 0 False False False True False

Additional files