Gene name: YMD8
Reference locus (S288C): YML038C
Gene biotype: protein_coding
Description: Putative nucleotide-sugar transporter ymd8; Putative nucleotide sugar transporter; has similarity to Vrg4p
Top 10 interactors (score): YEA4 (0.962); HUT1 (0.899); VRG4 (0.891); HVG1 (0.878); SLY41 (0.803); THI74 (0.771); YHR127W (0.746); ANY1 (0.712); MCH5 (0.668); CWH43 (0.658); COT1 (0.627); FUN26 (0.598); PHO90 (0.597); YPR003C (0.588); FUI1 (0.583); YKE4 (0.58); PFA3 (0.574); YJR096W (0.573); SGE1 (0.572); ITR2 (0.571)
Homologues (species, bitscore): SLC35C2 (Homo sapiens, 115.9); Slc35c2 (Mus musculus, 115.2); slc35c2 (Danio rerio, 101.3); slc35c2 (Xenopus tropicalis, 120.6); CG14971 (Drosophila melanogaster, 107.5); Y47G6A.7 (Caenorhabditis elegans, 78.6); AT1G06470 (Arabidopsis thaliana, 105.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:252386-253714:- | gene-YML038C_AKU4011 | rna-NM_001182396.1_AKU4011 | cds-NP_013674.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:289173-290501:+ | gene-YML038C_BG1 | rna-NM_001182396.1_BG1 | cds-NP_013674.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:192292-193620:- | gene-YML038C_Bruggeman | rna-NM_001182396.1_Bruggeman | cds-NP_013674.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:194842-196170:- | gene-YML038C_CAT1 | rna-NM_001182396.1_CAT1 | cds-NP_013674.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:185341-186669:- | gene-YML038C_CBS1585 | rna-NM_001182396.1_CBS1585 | cds-NP_013674.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:190857-192185:- | gene-YML038C_CBS436 | rna-NM_001182396.1_CBS436 | cds-NP_013674.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:299074-300402:- | gene-YML038C_CBS6412 | rna-NM_001182396.1_CBS6412 | cds-NP_013674.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:184593-185921:- | gene-YML038C_CBS6413 | rna-NM_001182396.1_CBS6413 | cds-NP_013674.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:197297-198625:- | gene-YML038C_CENPK1137D | rna-NM_001182396.1_CENPK1137D | cds-NP_013674.1_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:185342-186670:- | gene-YML038C_EthanolRed | rna-NM_001182396.1_EthanolRed | cds-NP_013674.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:188306-189634:- | gene-YML038C_FaliES1 | rna-NM_001182396.1_FaliES1 | cds-NP_013674.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000237.1:22499-23827:+ | gene-YML038C_JAY291 | rna-NM_001182396.1_JAY291 | cds-NP_013674.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:190027-191355:- | gene-YML038C_MUCL30387 | rna-NM_001182396.1_MUCL30387 | cds-NP_013674.1_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:194038-195366:- | gene-YML038C_MUCL30388 | rna-NM_001182396.1_MUCL30388 | cds-NP_013674.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:185621-186949:- | gene-YML038C_MUCL39482 | rna-NM_001182396.1_MUCL39482 | cds-NP_013674.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:191130-192458:- | gene-YML038C_MUCL42920 | rna-NM_001182396.1_MUCL42920 | cds-NP_013674.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:202729-204057:- | gene-YML038C_NCIM3186 | rna-NM_001182396.1_NCIM3186 | cds-NP_013674.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:185564-186892:- | gene-YML038C_NCYC1407 | rna-NM_001182396.1_NCYC1407 | cds-NP_013674.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:191449-192777:- | gene-YML038C_PE2H3 | rna-NM_001182396.1_PE2H3 | cds-NP_013674.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:197544-198872:- | gene-YML038C_PE2H4 | rna-NM_001182396.1_PE2H4 | cds-NP_013674.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:202775-204103:- | gene-YML038C_S288C | rna-NM_001182396.1_S288C | cds-NP_013674.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000088.1:34745-36073:+ | gene-YML038C_SA1 | rna-NM_001182396.1_SA1 | cds-NP_013674.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:185379-186707:- | gene-YML038C_ThermosaccDry | rna-NM_001182396.1_ThermosaccDry | cds-NP_013674.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:189390-190718:- | gene-YML038C_VR1 | rna-NM_001182396.1_VR1 | cds-NP_013674.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:164454-165782:- | gene-YML038C_ZTW1 | rna-NM_001182396.1_ZTW1 | cds-NP_013674.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:196205-197533:- | gene-YML038C_Sparadoxus | rna-NM_001182396.1_Sparadoxus | cds-NP_013674.1_Sparadoxus | 89.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |