Gene name: YLR419W
Reference locus (S288C): YLR419W
Gene biotype: protein_coding
Description: Putative ATP-dependent RNA helicase YLR419W; Putative helicase with limited sequence similarity to human Rb protein; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; YLR419W is not an essential gene; Belongs to the DEAD box helicase family. DEAH subfamily
Top 10 interactors (score): YIH1 (0.892); YEL034C-A (0.89); MRH4 (0.801); DRS1 (0.791); XRN1 (0.767); DBP9 (0.758); YOL166C (0.752); GIR2 (0.749); YLR345W (0.749); RSE1 (0.748); TIF3 (0.742); FUN12 (0.731); RPG1 (0.725); PRP5 (0.714); HCA4 (0.714); DHH1 (0.713); YMR102C (0.706); FUN30 (0.697); TFB2 (0.696); DBP8 (0.695)
Homologues (species, bitscore): DHX57 (Homo sapiens, 377.9); Dhx57 (Mus musculus, 373.2); dhx57 (Danio rerio, 402.1); dhx36 (Xenopus tropicalis, 363.6); CG1582 (Drosophila melanogaster, 427.2); rha-1 (Caenorhabditis elegans, 344.4); AT1G58060 (Arabidopsis thaliana, 388.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:901979-906286:+ | gene-YLR419W_AKU4011 | rna-NM_001182307.3_AKU4011 | cds-NP_013523.3_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000048.1:134143-138447:+ | gene-YLR419W_BG1 | rna-NM_001182307.3_BG1 | cds-NP_013523.3_BG1 | 99.1 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:940285-944592:+ | gene-YLR419W_Bruggeman | rna-NM_001182307.3_Bruggeman | cds-NP_013523.3_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:935828-940132:+ | gene-YLR419W_CAT1 | rna-NM_001182307.3_CAT1 | cds-NP_013523.3_CAT1 | 99.1 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:937575-941882:+ | gene-YLR419W_CBS1585 | rna-NM_001182307.3_CBS1585 | cds-NP_013523.3_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:921232-925536:+ | gene-YLR419W_CBS436 | rna-NM_001182307.3_CBS436 | cds-NP_013523.3_CBS436 | 99.1 | 99.9 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:973616-977923:+ | gene-YLR419W_CBS6412 | rna-NM_001182307.3_CBS6412 | cds-NP_013523.3_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:937867-942174:+ | gene-YLR419W_CBS6413 | rna-NM_001182307.3_CBS6413 | cds-NP_013523.3_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:937290-941597:+ | gene-YLR419W_CENPK1137D | rna-NM_001182307.3_CENPK1137D | cds-NP_013523.3_CENPK1137D | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:894525-898832:+ | gene-YLR419W_EthanolRed | rna-NM_001182307.3_EthanolRed | cds-NP_013523.3_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:923835-928142:+ | gene-YLR419W_FaliES1 | rna-NM_001182307.3_FaliES1 | cds-NP_013523.3_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000434.1:76972-81276:+ | gene-YLR419W_JAY291 | rna-NM_001182307.3_JAY291 | cds-NP_013523.3_JAY291 | 99.1 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:939149-943456:+ | gene-YLR419W_MUCL30387 | rna-NM_001182307.3_MUCL30387 | cds-NP_013523.3_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:945247-949554:+ | gene-YLR419W_MUCL30388 | rna-NM_001182307.3_MUCL30388 | cds-NP_013523.3_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:938795-943102:+ | gene-YLR419W_MUCL39482 | rna-NM_001182307.3_MUCL39482 | cds-NP_013523.3_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:933451-937758:+ | gene-YLR419W_MUCL42920 | rna-NM_001182307.3_MUCL42920 | cds-NP_013523.3_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:958402-962709:+ | gene-YLR419W_NCIM3186 | rna-NM_001182307.3_NCIM3186 | cds-NP_013523.3_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:947975-952282:+ | gene-YLR419W_NCYC1407 | rna-NM_001182307.3_NCYC1407 | cds-NP_013523.3_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:934353-938657:+ | gene-YLR419W_PE2H3 | rna-NM_001182307.3_PE2H3 | cds-NP_013523.3_PE2H3 | 99.1 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:934097-938401:+ | gene-YLR419W_PE2H4 | rna-NM_001182307.3_PE2H4 | cds-NP_013523.3_PE2H4 | 99.1 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:958428-962735:+ | gene-YLR419W_S288C | rna-NM_001182307.3_S288C | cds-NP_013523.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000007.1:91938-96245:- | gene-YLR419W_SA1 | rna-NM_001182307.3_SA1 | cds-NP_013523.3_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:926914-931221:+ | gene-YLR419W_ThermosaccDry | rna-NM_001182307.3_ThermosaccDry | cds-NP_013523.3_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:939443-943747:+ | gene-YLR419W_VR1 | rna-NM_001182307.3_VR1 | cds-NP_013523.3_VR1 | 99.1 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000025.1:263629-267936:+ | gene-YLR419W_ZTW1 | rna-NM_001182307.3_ZTW1 | cds-NP_013523.3_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:912498-916808:+ | gene-YLR419W_Sparadoxus | rna-NM_001182307.3_Sparadoxus | cds-NP_013523.3_Sparadoxus | 89.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |