Gene name: YLR410W-B
Reference locus (S288C): YLR410W-B
Gene biotype: protein_coding
Description: Transposon Ty2-LR1 Gag-Pol polyprotein; Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes
Top 10 interactors (score): YDL211C (0.841); YDR476C (0.779); TTI2 (0.752); EHD3 (0.748); YDL218W (0.746); YNL320W (0.746); MRPL39 (0.711); ILS1 (0.698); MRPL28 (0.697); PHO92 (0.694); DAN4 (0.692); ATP8 (0.653); APL5 (0.617); SUV3 (0.617); IFM1 (0.611); VAR1 (0.61); PSY3 (0.592); YEH1 (0.578); GLO3 (0.574); FLO9 (0.527)
Homologues (species, bitscore): ENSDARP00000105592 (Danio rerio, 52.4); CRK8 (Arabidopsis thaliana, 96.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000136.1:1-1917:- | gene-YLR410W-B_BG1 | rna-NM_001184411.4_BG1 | cds-NP_058174.3_BG1 | 35.9 | 36.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | MBVY01000265.1:1-1915:+ | gene-YLR410W-B_Bruggeman | rna-NM_001184411.4_Bruggeman | cds-NP_058174.3_Bruggeman | 35.9 | 36.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | MBWC01000204.1:1-986:+ | gene-YLR410W-B_CAT1 | rna-NM_001184411.4_CAT1 | cds-NP_058174.3_CAT1 | 18.5 | 18.5 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | JH711476.1:1-410:- | gene-YLR410W-B_CENPK1137D | rna-NM_001184411.4_CENPK1137D | cds-NP_058174.3_CENPK1137D | 7.7 | 7.7 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000235.1:1-360:+ | gene-YLR410W-B_JAY291 | rna-NM_001184411.4_JAY291 | cds-NP_058174.3_JAY291 | 6.7 | 6.7 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | MBVW01000121.1:1-5192:+ | gene-YLR410W-B_MUCL30388 | rna-NM_001184411.4_MUCL30388 | cds-NP_058174.3_MUCL30388 | 97.4 | 97.7 | Unannotated | 1 | 1 | 0 | False | False | True | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | MBVV01000068.1:1-2620:+ | gene-YLR410W-B_MUCL42920 | rna-NM_001184411.4_MUCL42920 | cds-NP_058174.3_MUCL42920 | 49.2 | 49.2 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:941457-946770:+ | gene-YLR410W-B_NCIM3186 | rna-NM_001184411.4_NCIM3186 | cds-NP_058174.3_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:632116-637429:+ | gene-YLR410W-B_PE2H3 | rna-NM_001184411.4_PE2H3 | cds-NP_058174.3_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:629792-635105:+ | gene-YLR410W-B_PE2H4 | rna-NM_001184411.4_PE2H4 | cds-NP_058174.3_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:941483-946796:+ | gene-YLR410W-B_S288C | rna-NM_001184411.4_S288C | cds-NP_058174.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | MBVZ01000189.1:1-819:- | gene-YLR410W-B_VR1 | rna-NM_001184411.4_VR1 | cds-NP_058174.3_VR1 | 15.2 | 15.4 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1416128-1421396:+ | gene-YLR410W-B_Sparadoxus | rna-NM_001184411.4_Sparadoxus | cds-NP_058174.3_Sparadoxus | 74.5 | 96.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |