Gene name: YLR410W-A
Reference locus (S288C): YLR410W-A
Gene biotype: protein_coding
Description: Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag
Top 10 interactors (score): Unknown
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000235.1:1-360:+ | gene-YLR410W-A_JAY291 | rna-NM_001184410.1_JAY291 | cds-NP_058175.1_JAY291 | 27.2 | 27.3 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | MBVW01000121.1:1-1280:+ | gene-YLR410W-A_MUCL30388 | rna-NM_001184410.1_MUCL30388 | cds-NP_058175.1_MUCL30388 | 97.1 | 97.1 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | MBVV01000068.1:1-1278:+ | gene-YLR410W-A_MUCL42920 | rna-NM_001184410.1_MUCL42920 | cds-NP_058175.1_MUCL42920 | 96.9 | 97.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:941457-942773:+ | gene-YLR410W-A_NCIM3186 | rna-NM_001184410.1_NCIM3186 | cds-NP_058175.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:632116-633432:+ | gene-YLR410W-A_PE2H3 | rna-NM_001184410.1_PE2H3 | cds-NP_058175.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:629792-631108:+ | gene-YLR410W-A_PE2H4 | rna-NM_001184410.1_PE2H4 | cds-NP_058175.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:941483-942799:+ | gene-YLR410W-A_S288C | rna-NM_001184410.1_S288C | cds-NP_058175.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1416128-1417454:+ | gene-YLR410W-A_Sparadoxus | rna-NM_001184410.1_Sparadoxus | cds-NP_058175.1_Sparadoxus | 65.4 | 95.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |