YLR406C-A (YLR406C-A)

Gene profile

Gene name: YLR406C-A
Reference locus (S288C): YLR406C-A
Gene biotype: protein_coding

Description: Uncharacterized protein YLR406C-A; Putative protein of unknown function; SWAT-GFP fusion protein localizes to the endoplasmic reticulum and vacuole, while mCherry fusion localizes to just the vacuole

Top 10 interactors (score): Unknown

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005306.1:881741-881872:- gene-YLR406C-A_AKU4011 rna-NM_001184610.1_AKU4011 cds-NP_878135.1_AKU4011 86.6 88.0 Unannotated 1 1 0 False False False False True
BG1 GCA_001932575.1 Bioethanol South America MSHP01000048.1:113884-114034:- gene-YLR406C-A_BG1 rna-NM_001184610.1_BG1 cds-NP_878135.1_BG1 98.6 100.0 Unannotated 1 1 0 False False False True False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005514.1:920046-920177:- gene-YLR406C-A_Bruggeman rna-NM_001184610.1_Bruggeman cds-NP_878135.1_Bruggeman 86.6 88.0 Unannotated 1 1 0 False False False False True
CAT1 GCA_001738705.1 Bioethanol South America CM005530.1:915570-915720:- gene-YLR406C-A_CAT1 rna-NM_001184610.1_CAT1 cds-NP_878135.1_CAT1 98.6 100.0 Unannotated 1 1 0 False False False True False
CBS1585 GCA_001738375.1 Sake Asia CM005370.1:917336-917467:- gene-YLR406C-A_CBS1585 rna-NM_001184610.1_CBS1585 cds-NP_878135.1_CBS1585 86.6 88.0 Unannotated 1 1 0 False False False False True
CBS436 GCA_001738355.1 Sake Asia CM005354.1:900975-901125:- gene-YLR406C-A_CBS436 rna-NM_001184610.1_CBS436 cds-NP_878135.1_CBS436 98.6 100.0 Unannotated 1 1 0 False False False True False
CBS6412 GCA_001738345.1 Sake Asia CM005338.1:953378-953509:- gene-YLR406C-A_CBS6412 rna-NM_001184610.1_CBS6412 cds-NP_878135.1_CBS6412 86.6 88.0 Unannotated 1 1 0 False False False False True
CBS6413 GCA_001738265.1 Sake Asia CM005322.1:917628-917759:- gene-YLR406C-A_CBS6413 rna-NM_001184610.1_CBS6413 cds-NP_878135.1_CBS6413 86.6 88.0 Unannotated 1 1 0 False False False False True
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001533.1:917017-917166:- gene-YLR406C-A_CENPK1137D rna-NM_001184610.1_CENPK1137D cds-NP_878135.1_CENPK1137D 100.0 100.0 Verified 1 1 1 True True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005482.1:874283-874414:- gene-YLR406C-A_EthanolRed rna-NM_001184610.1_EthanolRed cds-NP_878135.1_EthanolRed 86.6 88.0 Unannotated 1 1 0 False False False False True
FaliES1 GCA_001738715.1 Bioethanol Asia CM005546.1:903593-903724:- gene-YLR406C-A_FaliES1 rna-NM_001184610.1_FaliES1 cds-NP_878135.1_FaliES1 86.6 88.0 Unannotated 1 1 0 False False False False True
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000434.1:56750-56884:- gene-YLR406C-A_JAY291 rna-NM_001184610.1_JAY291 cds-NP_878135.1_JAY291 88.7 89.3 Verified 1 1 1 False True False False False
MUCL30387 GCA_001738515.1 Bread Europe CM005418.1:918912-919043:- gene-YLR406C-A_MUCL30387 rna-NM_001184610.1_MUCL30387 cds-NP_878135.1_MUCL30387 86.6 88.0 Unannotated 1 1 0 False False False False True
MUCL30388 GCA_001738495.1 Bread Europe CM005450.1:925010-925141:- gene-YLR406C-A_MUCL30388 rna-NM_001184610.1_MUCL30388 cds-NP_878135.1_MUCL30388 86.6 88.0 Unannotated 1 1 0 False False False False True
MUCL39482 GCA_001738235.1 Sake Asia CM005290.1:918556-918687:- gene-YLR406C-A_MUCL39482 rna-NM_001184610.1_MUCL39482 cds-NP_878135.1_MUCL39482 86.6 88.0 Unannotated 1 1 0 False False False False True
MUCL42920 GCA_001738485.1 Bread Europe CM005434.1:913212-913343:- gene-YLR406C-A_MUCL42920 rna-NM_001184610.1_MUCL42920 cds-NP_878135.1_MUCL42920 86.6 88.0 Unannotated 1 1 0 False False False False True
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011821.1:932180-932329:- gene-YLR406C-A_NCIM3186 rna-NM_001184610.1_NCIM3186 cds-NP_878135.1_NCIM3186 98.0 100.0 Verified 1 1 1 False True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005274.1:927737-927868:- gene-YLR406C-A_NCYC1407 rna-NM_001184610.1_NCYC1407 cds-NP_878135.1_NCYC1407 86.6 88.0 Unannotated 1 1 0 False False False False True
PE2H3 GCA_905220325.1 Bioethanol South America HG994151.1:914131-914265:- gene-YLR406C-A_PE2H3 rna-NM_001184610.1_PE2H3 cds-NP_878135.1_PE2H3 88.7 89.3 Verified 1 1 1 False True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999883.1:913875-914009:- gene-YLR406C-A_PE2H4 rna-NM_001184610.1_PE2H4 cds-NP_878135.1_PE2H4 88.7 89.3 Verified 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001144.5:932206-932355:- gene-YLR406C-A_S288C rna-NM_001184610.1_S288C cds-NP_878135.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000007.1:116351-116482:+ gene-YLR406C-A_SA1 rna-NM_001184610.1_SA1 cds-NP_878135.1_SA1 86.6 88.0 Unannotated 1 1 0 False False False False True
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005498.1:906672-906803:- gene-YLR406C-A_ThermosaccDry rna-NM_001184610.1_ThermosaccDry cds-NP_878135.1_ThermosaccDry 86.6 88.0 Unannotated 1 1 0 False False False False True
VR1 GCA_001738595.1 Bioethanol South America CM005466.1:919221-919355:- gene-YLR406C-A_VR1 rna-NM_001184610.1_VR1 cds-NP_878135.1_VR1 88.7 89.3 Verified 1 1 1 False True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000025.1:243390-243521:- gene-YLR406C-A_ZTW1 rna-NM_001184610.1_ZTW1 cds-NP_878135.1_ZTW1 86.6 88.0 Unannotated 1 1 0 False False False False True

Additional files