YLR256W-A (YLR256W-A)

Gene profile

Gene name: YLR256W-A
Reference locus (S288C): YLR256W-A
Gene biotype: protein_coding

Description: Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag

Top 10 interactors (score): URK1 (0.818); CDD1 (0.749); DBP1 (0.748); URH1 (0.746); BFR1 (0.713); FCY1 (0.699); SRO9 (0.694); MBF1 (0.692); FCY2 (0.655); HEK2 (0.598); SCP160 (0.573); PUB1 (0.569); NHP6A (0.566); SUB2 (0.526); PUF3 (0.525); CBP2 (0.45)

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011822.1:196582-197904:+ gene-YLR256W-A_NCIM3186 rna-NM_001184409.1_NCIM3186 cds-NP_058173.1_NCIM3186 72.2 100.0 Mismatch 1 1 0 False False True False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001144.5:651117-652439:+ gene-YLR256W-A_S288C rna-NM_001184409.1_S288C cds-NP_058173.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False

Additional files