Gene name: YLR179C
Reference locus (S288C): YLR179C
Gene biotype: protein_coding
Description: Uncharacterized protein YLR179C; Protein of unknown function with similarity to Tfs1p; transcription is activated by paralogous proteins Yrm1p and Yrr1p along with proteins involved in multidrug resistance; GFP-tagged protein localizes to the cytoplasm and nucleus
Top 10 interactors (score): MRPL19 (0.982); SEC4 (0.964); ACB1 (0.939); FPR1 (0.939); MRPL4 (0.921); RSM23 (0.905); MRPL8 (0.896); TPI1 (0.891); MRPL3 (0.854); MRPL23 (0.845); MRPS5 (0.838); UGA1 (0.835); RSM18 (0.834); IMG2 (0.826); MRPS28 (0.826); MRPL37 (0.815); MRPL32 (0.81); YNK1 (0.808); MRPL10 (0.806); MRPL51 (0.806)
Homologues (species, bitscore): PEBP1 (Homo sapiens, 62.4); Pbp2 (Mus musculus, 62.8); pebp1 (Danio rerio, 63.5); pebp4 (Xenopus tropicalis, 62.8); CG10298 (Drosophila melanogaster, 76.6); F40A3.3 (Caenorhabditis elegans, 66.2); E12A11 (Arabidopsis thaliana, 51.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:468236-468841:- | gene-YLR179C_AKU4011 | rna-NM_001182066.1_AKU4011 | cds-NP_013280.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000177.1:25431-26036:- | gene-YLR179C_BG1 | rna-NM_001182066.1_BG1 | cds-NP_013280.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:508487-509092:- | gene-YLR179C_Bruggeman | rna-NM_001182066.1_Bruggeman | cds-NP_013280.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:508077-508682:- | gene-YLR179C_CAT1 | rna-NM_001182066.1_CAT1 | cds-NP_013280.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:503731-504336:- | gene-YLR179C_CBS1585 | rna-NM_001182066.1_CBS1585 | cds-NP_013280.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:493867-494472:- | gene-YLR179C_CBS436 | rna-NM_001182066.1_CBS436 | cds-NP_013280.1_CBS436 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:472288-472893:- | gene-YLR179C_CBS6412 | rna-NM_001182066.1_CBS6412 | cds-NP_013280.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:504023-504628:- | gene-YLR179C_CBS6413 | rna-NM_001182066.1_CBS6413 | cds-NP_013280.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:498760-499365:- | gene-YLR179C_CENPK1137D | rna-NM_001182066.1_CENPK1137D | cds-NP_013280.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:467757-468362:- | gene-YLR179C_EthanolRed | rna-NM_001182066.1_EthanolRed | cds-NP_013280.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:496684-497289:- | gene-YLR179C_FaliES1 | rna-NM_001182066.1_FaliES1 | cds-NP_013280.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000004.1:23587-24192:- | gene-YLR179C_JAY291 | rna-NM_001182066.1_JAY291 | cds-NP_013280.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:508508-509113:- | gene-YLR179C_MUCL30387 | rna-NM_001182066.1_MUCL30387 | cds-NP_013280.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:513440-514045:- | gene-YLR179C_MUCL30388 | rna-NM_001182066.1_MUCL30388 | cds-NP_013280.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:504712-505317:- | gene-YLR179C_MUCL39482 | rna-NM_001182066.1_MUCL39482 | cds-NP_013280.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:505212-505817:- | gene-YLR179C_MUCL42920 | rna-NM_001182066.1_MUCL42920 | cds-NP_013280.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:514082-514687:- | gene-YLR179C_NCIM3186 | rna-NM_001182066.1_NCIM3186 | cds-NP_013280.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:497139-497744:- | gene-YLR179C_NCYC1407 | rna-NM_001182066.1_NCYC1407 | cds-NP_013280.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:501375-501980:- | gene-YLR179C_PE2H3 | rna-NM_001182066.1_PE2H3 | cds-NP_013280.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:501119-501724:- | gene-YLR179C_PE2H4 | rna-NM_001182066.1_PE2H4 | cds-NP_013280.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:514108-514713:- | gene-YLR179C_S288C | rna-NM_001182066.1_S288C | cds-NP_013280.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000042.1:23644-24249:- | gene-YLR179C_SA1 | rna-NM_001182066.1_SA1 | cds-NP_013280.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:499187-499792:- | gene-YLR179C_ThermosaccDry | rna-NM_001182066.1_ThermosaccDry | cds-NP_013280.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:510488-511093:- | gene-YLR179C_VR1 | rna-NM_001182066.1_VR1 | cds-NP_013280.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000024.1:23486-24091:- | gene-YLR179C_ZTW1 | rna-NM_001182066.1_ZTW1 | cds-NP_013280.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:485247-485852:- | gene-YLR179C_Sparadoxus | rna-NM_001182066.1_Sparadoxus | cds-NP_013280.1_Sparadoxus | 87.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |