Gene name: YLR108C
Reference locus (S288C): YLR108C
Gene biotype: protein_coding
Description: BTB/POZ domain-containing protein YLR108C; Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nucleus; YLR108C is not an esssential gene; protein abundance increases in response to DNA replication stress; YLR108C has a paralog, YDR132C, that arose from the whole genome duplication
Top 10 interactors (score): YLR334C (0.757); YJL107C (0.677); YGL242C (0.671); MPO1 (0.667); YDL109C (0.659); YCR101C (0.651); DSD1 (0.619); POF1 (0.618); VPS55 (0.612); OCA5 (0.574); OCA1 (0.573); RDS1 (0.572); TDA5 (0.571); BNS1 (0.569); AIM23 (0.568); REX3 (0.567); OCA2 (0.565); YKR104W (0.563); PAU23 (0.562); ATE1 (0.561)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:349489-350946:- | gene-YLR108C_AKU4011 | rna-NM_001181995.1_AKU4011 | cds-NP_013209.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000212.1:312930-314387:- | gene-YLR108C_BG1 | rna-NM_001181995.1_BG1 | cds-NP_013209.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:359022-360479:- | gene-YLR108C_Bruggeman | rna-NM_001181995.1_Bruggeman | cds-NP_013209.1_Bruggeman | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:360532-361989:- | gene-YLR108C_CAT1 | rna-NM_001181995.1_CAT1 | cds-NP_013209.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:356631-358088:- | gene-YLR108C_CBS1585 | rna-NM_001181995.1_CBS1585 | cds-NP_013209.1_CBS1585 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:346876-348333:- | gene-YLR108C_CBS436 | rna-NM_001181995.1_CBS436 | cds-NP_013209.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:355050-356507:- | gene-YLR108C_CBS6412 | rna-NM_001181995.1_CBS6412 | cds-NP_013209.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:356897-358354:- | gene-YLR108C_CBS6413 | rna-NM_001181995.1_CBS6413 | cds-NP_013209.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:351688-353145:- | gene-YLR108C_CENPK1137D | rna-NM_001181995.1_CENPK1137D | cds-NP_013209.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:349049-350506:- | gene-YLR108C_EthanolRed | rna-NM_001181995.1_EthanolRed | cds-NP_013209.1_EthanolRed | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:348533-349990:- | gene-YLR108C_FaliES1 | rna-NM_001181995.1_FaliES1 | cds-NP_013209.1_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000129.1:123478-124935:- | gene-YLR108C_JAY291 | rna-NM_001181995.1_JAY291 | cds-NP_013209.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:356397-357854:- | gene-YLR108C_MUCL30387 | rna-NM_001181995.1_MUCL30387 | cds-NP_013209.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:364065-365522:- | gene-YLR108C_MUCL30388 | rna-NM_001181995.1_MUCL30388 | cds-NP_013209.1_MUCL30388 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:357140-358597:- | gene-YLR108C_MUCL39482 | rna-NM_001181995.1_MUCL39482 | cds-NP_013209.1_MUCL39482 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:357260-358717:- | gene-YLR108C_MUCL42920 | rna-NM_001181995.1_MUCL42920 | cds-NP_013209.1_MUCL42920 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:366641-368098:- | gene-YLR108C_NCIM3186 | rna-NM_001181995.1_NCIM3186 | cds-NP_013209.1_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:349414-350871:- | gene-YLR108C_NCYC1407 | rna-NM_001181995.1_NCYC1407 | cds-NP_013209.1_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:354642-356099:- | gene-YLR108C_PE2H3 | rna-NM_001181995.1_PE2H3 | cds-NP_013209.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:354383-355840:- | gene-YLR108C_PE2H4 | rna-NM_001181995.1_PE2H4 | cds-NP_013209.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:366667-368124:- | gene-YLR108C_S288C | rna-NM_001181995.1_S288C | cds-NP_013209.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000033.1:5964-7421:+ | gene-YLR108C_SA1 | rna-NM_001181995.1_SA1 | cds-NP_013209.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:349492-350949:- | gene-YLR108C_ThermosaccDry | rna-NM_001181995.1_ThermosaccDry | cds-NP_013209.1_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:362882-364339:- | gene-YLR108C_VR1 | rna-NM_001181995.1_VR1 | cds-NP_013209.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000023.1:348191-349648:- | gene-YLR108C_ZTW1 | rna-NM_001181995.1_ZTW1 | cds-NP_013209.1_ZTW1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:356941-358398:- | gene-YLR108C_Sparadoxus | rna-NM_001181995.1_Sparadoxus | cds-NP_013209.1_Sparadoxus | 86.9 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |