Gene name: YLR046C
Reference locus (S288C): YLR046C
Gene biotype: protein_coding
Description: Putative membrane protein; member of the fungal lipid-translocating exporter (LTE) family of proteins; transcription is activated by paralogous transcription factors Yrm1p and Yrr1p along with genes involved in multidrug resistance; YLR046C has a paralog, RTA1, that arose from the whole genome duplication
Top 10 interactors (score): YJR124C (0.744); YBL113C (0.716); YJR015W (0.712); PAU4 (0.712); PAU12 (0.712); YEL077C (0.699); PRM4 (0.698); YLL066C (0.697); YLL067C (0.697); PAU15 (0.696); THI73 (0.693); PAU2 (0.692); NPP1 (0.678); YHL050C (0.672); YIL177C (0.659); YJL225C (0.615); YPR204W (0.613); PAU1 (0.613); PAU14 (0.613); YRF1-3 (0.612)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:220488-221300:- | gene-YLR046C_AKU4011 | rna-NM_001181933.1_AKU4011 | cds-NP_013147.1_AKU4011 | 97.0 | 99.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000212.1:183626-184438:- | gene-YLR046C_BG1 | rna-NM_001181933.1_BG1 | cds-NP_013147.1_BG1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:230398-231210:- | gene-YLR046C_Bruggeman | rna-NM_001181933.1_Bruggeman | cds-NP_013147.1_Bruggeman | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:230723-231535:- | gene-YLR046C_CAT1 | rna-NM_001181933.1_CAT1 | cds-NP_013147.1_CAT1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:227626-228436:- | gene-YLR046C_CBS1585 | rna-NM_001181933.1_CBS1585 | cds-NP_013147.1_CBS1585 | 96.8 | 98.7 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:218261-219073:- | gene-YLR046C_CBS436 | rna-NM_001181933.1_CBS436 | cds-NP_013147.1_CBS436 | 98.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:226035-226847:- | gene-YLR046C_CBS6412 | rna-NM_001181933.1_CBS6412 | cds-NP_013147.1_CBS6412 | 96.9 | 99.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:227887-228699:- | gene-YLR046C_CBS6413 | rna-NM_001181933.1_CBS6413 | cds-NP_013147.1_CBS6413 | 97.0 | 99.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:217295-218107:- | gene-YLR046C_CENPK1137D | rna-NM_001181933.1_CENPK1137D | cds-NP_013147.1_CENPK1137D | 97.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:220004-220817:- | gene-YLR046C_EthanolRed | rna-NM_001181933.1_EthanolRed | cds-NP_013147.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:219890-220703:- | gene-YLR046C_FaliES1 | rna-NM_001181933.1_FaliES1 | cds-NP_013147.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000238.1:4302-5114:+ | gene-YLR046C_JAY291 | rna-NM_001181933.1_JAY291 | cds-NP_013147.1_JAY291 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:227750-228562:- | gene-YLR046C_MUCL30387 | rna-NM_001181933.1_MUCL30387 | cds-NP_013147.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:235414-236226:- | gene-YLR046C_MUCL30388 | rna-NM_001181933.1_MUCL30388 | cds-NP_013147.1_MUCL30388 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:228121-228931:- | gene-YLR046C_MUCL39482 | rna-NM_001181933.1_MUCL39482 | cds-NP_013147.1_MUCL39482 | 96.8 | 98.7 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:228027-228839:- | gene-YLR046C_MUCL42920 | rna-NM_001181933.1_MUCL42920 | cds-NP_013147.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:237975-238787:- | gene-YLR046C_NCIM3186 | rna-NM_001181933.1_NCIM3186 | cds-NP_013147.1_NCIM3186 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:220180-220992:- | gene-YLR046C_NCYC1407 | rna-NM_001181933.1_NCYC1407 | cds-NP_013147.1_NCYC1407 | 97.0 | 99.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:226049-226861:- | gene-YLR046C_PE2H3 | rna-NM_001181933.1_PE2H3 | cds-NP_013147.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:225790-226602:- | gene-YLR046C_PE2H4 | rna-NM_001181933.1_PE2H4 | cds-NP_013147.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:238001-238813:- | gene-YLR046C_S288C | rna-NM_001181933.1_S288C | cds-NP_013147.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000046.1:63892-64704:- | gene-YLR046C_SA1 | rna-NM_001181933.1_SA1 | cds-NP_013147.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:220078-220889:- | gene-YLR046C_ThermosaccDry | rna-NM_001181933.1_ThermosaccDry | cds-NP_013147.1_ThermosaccDry | 87.2 | 99.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:233497-234309:- | gene-YLR046C_VR1 | rna-NM_001181933.1_VR1 | cds-NP_013147.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000023.1:219441-220253:- | gene-YLR046C_ZTW1 | rna-NM_001181933.1_ZTW1 | cds-NP_013147.1_ZTW1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:228309-229121:- | gene-YLR046C_Sparadoxus | rna-NM_001181933.1_Sparadoxus | cds-NP_013147.1_Sparadoxus | 83.4 | 98.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |