Gene name: YLR035C-A
Reference locus (S288C): YLR035C-A
Gene biotype: protein_coding
Description: Retrotransposon TYA Gag and TYB Pol genes; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); YLR035C-A is part of a mutant retrotransposon
Top 10 interactors (score): YGR027W-A (0.894); YMR051C (0.746); SLM5 (0.698); RHB1 (0.525)
Homologues (species, bitscore): dp (Drosophila melanogaster, 50.4); CRK8 (Arabidopsis thaliana, 96.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | MBVO01000062.1:260-3727:- | gene-YLR035C-A_AKU4011 | rna-NM_001184318.1_AKU4011 | cds-NP_013136.1_AKU4011 | 97.7 | 99.9 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000176.1:82128-85595:- | gene-YLR035C-A_BG1 | rna-NM_001184318.1_BG1 | cds-NP_013136.1_BG1 | 96.5 | 99.9 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | MBVY01000246.1:1-1841:+ | gene-YLR035C-A_Bruggeman | rna-NM_001184318.1_Bruggeman | cds-NP_013136.1_Bruggeman | 51.5 | 53.0 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | MBWC01000083.1:1-1567:+ | gene-YLR035C-A_CAT1 | rna-NM_001184318.1_CAT1 | cds-NP_013136.1_CAT1 | 43.3 | 45.1 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | MBVS01000102.1:1-3439:- | gene-YLR035C-A_CBS1585 | rna-NM_001184318.1_CBS1585 | cds-NP_013136.1_CBS1585 | 96.9 | 99.1 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | MBVR01000068.1:7-2969:+ | gene-YLR035C-A_CBS436 | rna-NM_001184318.1_CBS436 | cds-NP_013136.1_CBS436 | 65.3 | 81.9 | Unannotated | 1 | 1 | 0 | False | False | True | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | JH711470.1:1-361:+ | gene-YLR035C-A_CENPK1137D | rna-NM_001184318.1_CENPK1137D | cds-NP_013136.1_CENPK1137D | 10.2 | 10.4 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:401127-403975:+ | gene-YLR035C-A_EthanolRed | rna-NM_001184318.1_EthanolRed | cds-NP_013136.1_EthanolRed | 63.5 | 77.6 | Unannotated | 1 | 1 | 0 | False | False | True | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | MBWD01000059.1:260-3628:- | gene-YLR035C-A_FaliES1 | rna-NM_001184318.1_FaliES1 | cds-NP_013136.1_FaliES1 | 94.9 | 97.1 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000324.1:1-757:- | gene-YLR035C-A_JAY291 | rna-NM_001184318.1_JAY291 | cds-NP_013136.1_JAY291 | 21.6 | 21.8 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | MBVX01000311.1:1928-3764:+ | gene-YLR035C-A_MUCL30387 | rna-NM_001184318.1_MUCL30387 | cds-NP_013136.1_MUCL30387 | 51.5 | 52.9 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | MBVW01000265.1:1-1166:- | gene-YLR035C-A_MUCL30388 | rna-NM_001184318.1_MUCL30388 | cds-NP_013136.1_MUCL30388 | 33.0 | 33.6 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | MBVN01000086.1:232-3699:- | gene-YLR035C-A_MUCL39482 | rna-NM_001184318.1_MUCL39482 | cds-NP_013136.1_MUCL39482 | 97.7 | 99.9 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | MBVV01000288.1:1-1362:+ | gene-YLR035C-A_MUCL42920 | rna-NM_001184318.1_MUCL42920 | cds-NP_013136.1_MUCL42920 | 37.6 | 39.2 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:846493-849963:+ | gene-YLR035C-A_NCIM3186 | rna-NM_001184318.1_NCIM3186 | cds-NP_013136.1_NCIM3186 | 96.2 | 99.9 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | MBVM01000004.1:261-3728:- | gene-YLR035C-A_NCYC1407 | rna-NM_001184318.1_NCYC1407 | cds-NP_013136.1_NCYC1407 | 97.8 | 99.9 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:1024507-1027974:- | gene-YLR035C-A_PE2H3 | rna-NM_001184318.1_PE2H3 | cds-NP_013136.1_PE2H3 | 97.6 | 99.9 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:287911-291369:- | gene-YLR035C-A_PE2H4 | rna-NM_001184318.1_PE2H4 | cds-NP_013136.1_PE2H4 | 97.6 | 99.7 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:215440-218907:- | gene-YLR035C-A_S288C | rna-NM_001184318.1_S288C | cds-NP_013136.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000171.1:1-1966:+ | gene-YLR035C-A_SA1 | rna-NM_001184318.1_SA1 | cds-NP_013136.1_SA1 | 53.4 | 56.6 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | MBWA01000056.1:260-3603:- | gene-YLR035C-A_ThermosaccDry | rna-NM_001184318.1_ThermosaccDry | cds-NP_013136.1_ThermosaccDry | 94.2 | 96.3 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | MBVZ01000016.1:1-931:+ | gene-YLR035C-A_VR1 | rna-NM_001184318.1_VR1 | cds-NP_013136.1_VR1 | 25.4 | 26.8 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000001.1:780-4251:+ | gene-YLR035C-A_ZTW1 | rna-NM_001184318.1_ZTW1 | cds-NP_013136.1_ZTW1 | 70.1 | 92.0 | Unannotated | 1 | 1 | 0 | False | False | True | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:441277-444744:- | gene-YLR035C-A_Sparadoxus | rna-NM_001184318.1_Sparadoxus | cds-NP_013136.1_Sparadoxus | 88.3 | 99.9 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |