YLL054C (YLL054C)


Gene profile

Gene name: YLL054C
Reference locus (S288C): YLL054C
Gene biotype: protein_coding

Description: Uncharacterized transcriptional regulatory protein YLL054C; Putative protein of unknown function with similarity to Pip2p; an oleate-specific transcriptional activator of peroxisome proliferation; YLL054C is not an essential gene

Top 10 interactors (score): TBS1 (0.91); YLL053C (0.813); IES1 (0.753); LDB18 (0.748); AAD14 (0.718); IES4 (0.717); AQY2 (0.712); YCT1 (0.711); FRE6 (0.711); YLR278C (0.693); ARP4 (0.693); FPR4 (0.651); ZRT2 (0.568); DAL5 (0.526); YKE4 (0.524); PUS5 (0.499); PUS6 (0.497)

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser


Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005306.1:19815-22346:- gene-YLL054C_AKU4011 rna-NM_001181874.2_AKU4011 cds-NP_013046.2_AKU4011 99.3 100.0 Verified 1 1 1 False True False False False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000204.1:6069-8600:+ gene-YLL054C_BG1 rna-NM_001181874.2_BG1 cds-NP_013046.2_BG1 99.6 100.0 Verified 1 1 1 False True False False False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005514.1:29192-31723:- gene-YLL054C_Bruggeman rna-NM_001181874.2_Bruggeman cds-NP_013046.2_Bruggeman 99.9 100.0 Verified 1 1 1 False True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005530.1:30685-33216:- gene-YLL054C_CAT1 rna-NM_001181874.2_CAT1 cds-NP_013046.2_CAT1 99.9 100.0 Verified 1 1 1 False True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005370.1:27713-30244:- gene-YLL054C_CBS1585 rna-NM_001181874.2_CBS1585 cds-NP_013046.2_CBS1585 99.3 100.0 Verified 1 1 1 False True False False False
CBS436 GCA_001738355.1 Sake Asia CM005354.1:17763-20294:- gene-YLL054C_CBS436 rna-NM_001181874.2_CBS436 cds-NP_013046.2_CBS436 99.8 100.0 Mismatch 1 1 1 False True False False False
CBS6412 GCA_001738345.1 Sake Asia CM005338.1:27759-30290:- gene-YLL054C_CBS6412 rna-NM_001181874.2_CBS6412 cds-NP_013046.2_CBS6412 99.3 100.0 Mismatch 1 1 1 False True False False False
CBS6413 GCA_001738265.1 Sake Asia CM005322.1:27523-30054:- gene-YLL054C_CBS6413 rna-NM_001181874.2_CBS6413 cds-NP_013046.2_CBS6413 99.3 100.0 Verified 1 1 1 False True False False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001533.1:17624-20155:- gene-YLL054C_CENPK1137D rna-NM_001181874.2_CENPK1137D cds-NP_013046.2_CENPK1137D 100.0 100.0 Verified 1 1 1 True True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005482.1:20628-23159:- gene-YLL054C_EthanolRed rna-NM_001181874.2_EthanolRed cds-NP_013046.2_EthanolRed 99.4 100.0 Verified 1 1 1 False True False False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005546.1:19717-22248:- gene-YLL054C_FaliES1 rna-NM_001181874.2_FaliES1 cds-NP_013046.2_FaliES1 99.4 100.0 Verified 1 1 1 False True False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000073.1:18887-21418:- gene-YLL054C_JAY291 rna-NM_001181874.2_JAY291 cds-NP_013046.2_JAY291 99.9 100.0 Verified 1 1 1 False True False False False
MUCL30387 GCA_001738515.1 Bread Europe CM005418.1:27499-30031:- gene-YLL054C_MUCL30387 rna-NM_001181874.2_MUCL30387 cds-NP_013046.2_MUCL30387 99.8 100.0 Unannotated 1 1 0 False False False True False
MUCL30388 GCA_001738495.1 Bread Europe CM005450.1:31503-34035:- gene-YLL054C_MUCL30388 rna-NM_001181874.2_MUCL30388 cds-NP_013046.2_MUCL30388 99.9 100.0 Unannotated 1 1 0 False False False True False
MUCL39482 GCA_001738235.1 Sake Asia CM005290.1:27715-30246:- gene-YLL054C_MUCL39482 rna-NM_001181874.2_MUCL39482 cds-NP_013046.2_MUCL39482 99.3 100.0 Verified 1 1 1 False True False False False
MUCL42920 GCA_001738485.1 Bread Europe CM005434.1:28070-30601:- gene-YLL054C_MUCL42920 rna-NM_001181874.2_MUCL42920 cds-NP_013046.2_MUCL42920 99.9 100.0 Verified 1 1 1 False True False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011821.1:32647-35178:- gene-YLL054C_NCIM3186 rna-NM_001181874.2_NCIM3186 cds-NP_013046.2_NCIM3186 99.1 100.0 Verified 1 1 1 False True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005274.1:19555-22086:- gene-YLL054C_NCYC1407 rna-NM_001181874.2_NCYC1407 cds-NP_013046.2_NCYC1407 99.3 100.0 Verified 1 1 1 False True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994151.1:26292-28823:- gene-YLL054C_PE2H3 rna-NM_001181874.2_PE2H3 cds-NP_013046.2_PE2H3 99.9 100.0 Verified 1 1 1 False True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999883.1:26089-28620:- gene-YLL054C_PE2H4 rna-NM_001181874.2_PE2H4 cds-NP_013046.2_PE2H4 99.9 100.0 Verified 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001144.5:32673-35204:- gene-YLL054C_S288C rna-NM_001181874.2_S288C cds-NP_013046.2_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000047.1:25925-28456:- gene-YLL054C_SA1 rna-NM_001181874.2_SA1 cds-NP_013046.2_SA1 99.9 100.0 Verified 1 1 1 False True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005498.1:20252-22783:- gene-YLL054C_ThermosaccDry rna-NM_001181874.2_ThermosaccDry cds-NP_013046.2_ThermosaccDry 99.4 100.0 Verified 1 1 1 False True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005466.1:32477-35008:- gene-YLL054C_VR1 rna-NM_001181874.2_VR1 cds-NP_013046.2_VR1 99.7 100.0 Verified 1 1 1 False True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000023.1:19581-22113:- gene-YLL054C_ZTW1 rna-NM_001181874.2_ZTW1 cds-NP_013046.2_ZTW1 99.5 100.0 Unannotated 1 1 0 False False False True False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047498.1:27971-30501:- gene-YLL054C_Sparadoxus rna-NM_001181874.2_Sparadoxus cds-NP_013046.2_Sparadoxus 87.4 99.9 Verified 1 1 0 False False False True False

Additional files