Gene name: YKT6
Reference locus (S288C): YKL196C
Gene biotype: protein_coding
Description: Synaptobrevin homolog YKT6; Vesicle membrane protein (v-SNARE) with acyltransferase activity; involved in trafficking to and within the Golgi, endocytic trafficking to the vacuole, and vacuolar fusion; membrane localization due to prenylation at the carboxy-terminus; human homolog YKT6 can complement yeast ykt6 mutant; Belongs to the synaptobrevin family
Top 10 interactors (score): SED5 (0.999); VAM7 (0.999); VPS33 (0.999); VTI1 (0.999); GOS1 (0.999); BET1 (0.999); VAM3 (0.999); NYV1 (0.999); BOS1 (0.998); SLY1 (0.998); SEC17 (0.998); SSO1 (0.998); SFT1 (0.997); UFE1 (0.996); USE1 (0.995); SEC9 (0.995); PEP12 (0.994); TLG2 (0.994); SNC1 (0.993); TLG1 (0.993)
Homologues (species, bitscore): YKT6 (Homo sapiens, 197.2); Ykt6 (Mus musculus, 203.0); ykt6 (Danio rerio, 193.0); ykt6 (Xenopus tropicalis, 139.0); Ykt6 (Drosophila melanogaster, 194.9); ykt-6 (Caenorhabditis elegans, 175.3); YKT61 (Arabidopsis thaliana, 182.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:61294-61896:- | gene-YKL196C_AKU4011 | rna-NM_001179762.1_AKU4011 | cds-NP_012725.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000030.1:38260-38862:- | gene-YKL196C_BG1 | rna-NM_001179762.1_BG1 | cds-NP_012725.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:78945-79547:- | gene-YKL196C_Bruggeman | rna-NM_001179762.1_Bruggeman | cds-NP_012725.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:74117-74719:- | gene-YKL196C_CAT1 | rna-NM_001179762.1_CAT1 | cds-NP_012725.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:73279-73881:- | gene-YKL196C_CBS1585 | rna-NM_001179762.1_CBS1585 | cds-NP_012725.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:72510-73112:- | gene-YKL196C_CBS436 | rna-NM_001179762.1_CBS436 | cds-NP_012725.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:58531-59133:- | gene-YKL196C_CBS6412 | rna-NM_001179762.1_CBS6412 | cds-NP_012725.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:73916-74518:- | gene-YKL196C_CBS6413 | rna-NM_001179762.1_CBS6413 | cds-NP_012725.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:74710-75312:- | gene-YKL196C_CENPK1137D | rna-NM_001179762.1_CENPK1137D | cds-NP_012725.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:72727-73329:- | gene-YKL196C_EthanolRed | rna-NM_001179762.1_EthanolRed | cds-NP_012725.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:72786-73388:- | gene-YKL196C_FaliES1 | rna-NM_001179762.1_FaliES1 | cds-NP_012725.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000006.2:72343-72945:- | gene-YKL196C_JAY291 | rna-NM_001179762.1_JAY291 | cds-NP_012725.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:81476-82078:- | gene-YKL196C_MUCL30387 | rna-NM_001179762.1_MUCL30387 | cds-NP_012725.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:75568-76170:- | gene-YKL196C_MUCL30388 | rna-NM_001179762.1_MUCL30388 | cds-NP_012725.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:73336-73938:- | gene-YKL196C_MUCL39482 | rna-NM_001179762.1_MUCL39482 | cds-NP_012725.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:76878-77480:- | gene-YKL196C_MUCL42920 | rna-NM_001179762.1_MUCL42920 | cds-NP_012725.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:74921-75523:- | gene-YKL196C_NCIM3186 | rna-NM_001179762.1_NCIM3186 | cds-NP_012725.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:73360-73962:- | gene-YKL196C_NCYC1407 | rna-NM_001179762.1_NCYC1407 | cds-NP_012725.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:80883-81485:- | gene-YKL196C_PE2H3 | rna-NM_001179762.1_PE2H3 | cds-NP_012725.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:77177-77779:- | gene-YKL196C_PE2H4 | rna-NM_001179762.1_PE2H4 | cds-NP_012725.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:74932-75534:- | gene-YKL196C_S288C | rna-NM_001179762.1_S288C | cds-NP_012725.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000113.1:8812-9414:- | gene-YKL196C_SA1 | rna-NM_001179762.1_SA1 | cds-NP_012725.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:73534-74136:- | gene-YKL196C_ThermosaccDry | rna-NM_001179762.1_ThermosaccDry | cds-NP_012725.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:72589-73191:- | gene-YKL196C_VR1 | rna-NM_001179762.1_VR1 | cds-NP_012725.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:72457-73059:- | gene-YKL196C_ZTW1 | rna-NM_001179762.1_ZTW1 | cds-NP_012725.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:86772-87374:- | gene-YKL196C_Sparadoxus | rna-NM_001179762.1_Sparadoxus | cds-NP_012725.1_Sparadoxus | 92.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |