YKR104W (YKR104W)


Gene profile

Gene name: YKR104W
Reference locus (S288C): YKR104W
Gene biotype: protein_coding

Description: Putative uncharacterized protein YKR104W; Putative transporter of the MRP subfamily; contains a stop codon in S288C; adjacent ORFs YKR103W and YKR104W are merged in different strain backgrounds; MRP stands for multidrug resistance-associated protein; Belongs to the ABC transporter superfamily. ABCC family. Conjugate transporter (TC 3.A.1.208) subfamily

Top 10 interactors (score): ADP1 (0.772); PDR18 (0.745); YOL075C (0.736); PDR11 (0.733); BUD23 (0.709); YGL242C (0.597); YCR101C (0.576); YDR132C (0.574); YDL109C (0.573); MPO1 (0.572); POF1 (0.569); DSD1 (0.569); YLR108C (0.563); VPS55 (0.559); PDR12 (0.542); SNQ2 (0.54); OCA1 (0.528); OCA5 (0.525); TDA5 (0.523); AUS1 (0.521)

Homologues (species, bitscore): ABCC4 (Homo sapiens, 243.8); Abcc4 (Mus musculus, 235.3); abcc4 (Danio rerio, 241.9); abcc4 (Xenopus tropicalis, 245.0); l(2)03659 (Drosophila melanogaster, 250.0); mrp-4 (Caenorhabditis elegans, 243.4); ABCC14 (Arabidopsis thaliana, 237.3)

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser


Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005305.1:642883-643803:+ gene-YKR104W_AKU4011 rna-NM_001179894.1_AKU4011 cds-NP_013030.1_AKU4011 99.1 100.0 Verified 1 1 1 False True False False False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000113.1:1018-1938:- gene-YKR104W_BG1 rna-NM_001179894.1_BG1 cds-NP_013030.1_BG1 99.8 100.0 Verified 1 1 1 True True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005529.1:662533-663453:+ gene-YKR104W_CAT1 rna-NM_001179894.1_CAT1 cds-NP_013030.1_CAT1 99.7 100.0 Verified 1 1 1 False True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005369.1:655216-656136:+ gene-YKR104W_CBS1585 rna-NM_001179894.1_CBS1585 cds-NP_013030.1_CBS1585 99.2 100.0 Verified 1 1 1 False True False False False
CBS436 GCA_001738355.1 Sake Asia CM005353.1:653680-654600:+ gene-YKR104W_CBS436 rna-NM_001179894.1_CBS436 cds-NP_013030.1_CBS436 99.8 100.0 Mismatch 1 1 1 True True False False False
CBS6412 GCA_001738345.1 Sake Asia CM005337.1:638405-639325:+ gene-YKR104W_CBS6412 rna-NM_001179894.1_CBS6412 cds-NP_013030.1_CBS6412 99.3 100.0 Mismatch 1 1 1 False True False False False
CBS6413 GCA_001738265.1 Sake Asia CM005321.1:655315-656235:+ gene-YKR104W_CBS6413 rna-NM_001179894.1_CBS6413 cds-NP_013030.1_CBS6413 99.2 100.0 Verified 1 1 1 False True False False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001532.1:655840-656760:+ gene-YKR104W_CENPK1137D rna-NM_001179894.1_CENPK1137D cds-NP_013030.1_CENPK1137D 100.0 100.0 Verified 1 1 1 True True False False False
MUCL39482 GCA_001738235.1 Sake Asia CM005289.1:653525-654445:+ gene-YKR104W_MUCL39482 rna-NM_001179894.1_MUCL39482 cds-NP_013030.1_MUCL39482 99.2 100.0 Verified 1 1 1 False True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005273.1:654826-655746:+ gene-YKR104W_NCYC1407 rna-NM_001179894.1_NCYC1407 cds-NP_013030.1_NCYC1407 99.2 100.0 Verified 1 1 1 False True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999882.1:663567-664487:+ gene-YKR104W_PE2H4 rna-NM_001179894.1_PE2H4 cds-NP_013030.1_PE2H4 99.7 100.0 Verified 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001143.9:656836-657756:+ gene-YKR104W_S288C rna-NM_001179894.1_S288C cds-NP_013030.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000029.1:912-1832:- gene-YKR104W_SA1 rna-NM_001179894.1_SA1 cds-NP_013030.1_SA1 99.1 100.0 Verified 1 1 1 False True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005465.1:654565-655485:+ gene-YKR104W_VR1 rna-NM_001179894.1_VR1 cds-NP_013030.1_VR1 99.7 100.0 Verified 1 1 1 False True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000022.1:652194-653114:+ gene-YKR104W_ZTW1 rna-NM_001179894.1_ZTW1 cds-NP_013030.1_ZTW1 99.2 100.0 Verified 1 1 1 False True False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047497.1:679075-679995:+ gene-YKR104W_Sparadoxus rna-NM_001179894.1_Sparadoxus cds-NP_013030.1_Sparadoxus 88.4 100.0 Mismatch 1 1 0 False False False True False

Additional files