Gene name: YKR078W
Reference locus (S288C): YKR078W
Gene biotype: protein_coding
Description: Uncharacterized protein YKR078W; Cytoplasmic protein of unknown function; potential Cdc28p substrate; contains a Phox homology (PX) domain and specifically binds phosphatidylinositol 3-phosphate (PtdIns-3-P); YKR078W has a paralog, VPS5, that arose from the whole genome duplication
Top 10 interactors (score): VPS29 (0.988); PEP8 (0.988); VPS35 (0.987); VPS17 (0.761); YKR073C (0.749); SNX3 (0.728); YPT7 (0.708); VPS27 (0.658); MDM1 (0.648); MVP1 (0.593); SNX4 (0.593); VPS34 (0.582); ECM4 (0.575); RPT4 (0.571); EDE1 (0.557); TLG1 (0.527); YPT52 (0.527); YOR364W (0.524); VPS21 (0.513); YPT53 (0.513)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:570982-572739:+ | gene-YKR078W_AKU4011 | rna-NM_001179868.3_AKU4011 | cds-NP_013004.3_AKU4011 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000113.1:71488-73245:- | gene-YKR078W_BG1 | rna-NM_001179868.3_BG1 | cds-NP_013004.3_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:593559-595316:+ | gene-YKR078W_Bruggeman | rna-NM_001179868.3_Bruggeman | cds-NP_013004.3_Bruggeman | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:589079-590836:+ | gene-YKR078W_CAT1 | rna-NM_001179868.3_CAT1 | cds-NP_013004.3_CAT1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:583469-585226:+ | gene-YKR078W_CBS1585 | rna-NM_001179868.3_CBS1585 | cds-NP_013004.3_CBS1585 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:581853-583610:+ | gene-YKR078W_CBS436 | rna-NM_001179868.3_CBS436 | cds-NP_013004.3_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:566757-568514:+ | gene-YKR078W_CBS6412 | rna-NM_001179868.3_CBS6412 | cds-NP_013004.3_CBS6412 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:583287-585044:+ | gene-YKR078W_CBS6413 | rna-NM_001179868.3_CBS6413 | cds-NP_013004.3_CBS6413 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:584606-586363:+ | gene-YKR078W_CENPK1137D | rna-NM_001179868.3_CENPK1137D | cds-NP_013004.3_CENPK1137D | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:580793-582550:+ | gene-YKR078W_EthanolRed | rna-NM_001179868.3_EthanolRed | cds-NP_013004.3_EthanolRed | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:584688-586445:+ | gene-YKR078W_FaliES1 | rna-NM_001179868.3_FaliES1 | cds-NP_013004.3_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000426.1:58489-60246:- | gene-YKR078W_JAY291 | rna-NM_001179868.3_JAY291 | cds-NP_013004.3_JAY291 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:593055-594812:+ | gene-YKR078W_MUCL30387 | rna-NM_001179868.3_MUCL30387 | cds-NP_013004.3_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:587398-589155:+ | gene-YKR078W_MUCL30388 | rna-NM_001179868.3_MUCL30388 | cds-NP_013004.3_MUCL30388 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:582310-584067:+ | gene-YKR078W_MUCL39482 | rna-NM_001179868.3_MUCL39482 | cds-NP_013004.3_MUCL39482 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:588332-590089:+ | gene-YKR078W_MUCL42920 | rna-NM_001179868.3_MUCL42920 | cds-NP_013004.3_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:584941-586698:+ | gene-YKR078W_NCIM3186 | rna-NM_001179868.3_NCIM3186 | cds-NP_013004.3_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:582722-584479:+ | gene-YKR078W_NCYC1407 | rna-NM_001179868.3_NCYC1407 | cds-NP_013004.3_NCYC1407 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:607888-609645:+ | gene-YKR078W_PE2H3 | rna-NM_001179868.3_PE2H3 | cds-NP_013004.3_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:592292-594049:+ | gene-YKR078W_PE2H4 | rna-NM_001179868.3_PE2H4 | cds-NP_013004.3_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:584952-586709:+ | gene-YKR078W_S288C | rna-NM_001179868.3_S288C | cds-NP_013004.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000029.1:95141-96898:- | gene-YKR078W_SA1 | rna-NM_001179868.3_SA1 | cds-NP_013004.3_SA1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:583935-585692:+ | gene-YKR078W_ThermosaccDry | rna-NM_001179868.3_ThermosaccDry | cds-NP_013004.3_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:583198-584955:+ | gene-YKR078W_VR1 | rna-NM_001179868.3_VR1 | cds-NP_013004.3_VR1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:580917-582674:+ | gene-YKR078W_ZTW1 | rna-NM_001179868.3_ZTW1 | cds-NP_013004.3_ZTW1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:606163-607920:+ | gene-YKR078W_Sparadoxus | rna-NM_001179868.3_Sparadoxus | cds-NP_013004.3_Sparadoxus | 86.4 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |