Gene name: YKR018C
Reference locus (S288C): YKR018C
Gene biotype: protein_coding
Description: Mitochondrial outer membrane protein YKR018C; Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus; protein abundance increases in response to DNA replication stress; YKR018C has a paralog, IML2, that arose from the whole genome duplication
Top 10 interactors (score): RIT1 (0.644); TFA1 (0.634); CNS1 (0.594); PRP24 (0.57); VPS3 (0.473); YNR029C (0.456); MON1 (0.408)
Homologues (species, bitscore): TTC39C (Homo sapiens, 77.4); Ttc39c (Mus musculus, 75.9); ttc39c (Danio rerio, 77.8); ttc39a (Xenopus tropicalis, 79.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:459394-461571:- | gene-YKR018C_AKU4011 | rna-NM_001179808.1_AKU4011 | cds-NP_012943.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000113.1:181931-184108:+ | gene-YKR018C_BG1 | rna-NM_001179808.1_BG1 | cds-NP_012943.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:481067-483244:- | gene-YKR018C_Bruggeman | rna-NM_001179808.1_Bruggeman | cds-NP_012943.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:476808-478985:- | gene-YKR018C_CAT1 | rna-NM_001179808.1_CAT1 | cds-NP_012943.1_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:472134-474311:- | gene-YKR018C_CBS1585 | rna-NM_001179808.1_CBS1585 | cds-NP_012943.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:470965-473142:- | gene-YKR018C_CBS436 | rna-NM_001179808.1_CBS436 | cds-NP_012943.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:456295-458472:- | gene-YKR018C_CBS6412 | rna-NM_001179808.1_CBS6412 | cds-NP_012943.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:471962-474139:- | gene-YKR018C_CBS6413 | rna-NM_001179808.1_CBS6413 | cds-NP_012943.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:473428-475605:- | gene-YKR018C_CENPK1137D | rna-NM_001179808.1_CENPK1137D | cds-NP_012943.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:469862-472039:- | gene-YKR018C_EthanolRed | rna-NM_001179808.1_EthanolRed | cds-NP_012943.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:472792-474969:- | gene-YKR018C_FaliES1 | rna-NM_001179808.1_FaliES1 | cds-NP_012943.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000077.1:78789-80966:+ | gene-YKR018C_JAY291 | rna-NM_001179808.1_JAY291 | cds-NP_012943.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:480383-482560:- | gene-YKR018C_MUCL30387 | rna-NM_001179808.1_MUCL30387 | cds-NP_012943.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:476074-478251:- | gene-YKR018C_MUCL30388 | rna-NM_001179808.1_MUCL30388 | cds-NP_012943.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:471451-473628:- | gene-YKR018C_MUCL39482 | rna-NM_001179808.1_MUCL39482 | cds-NP_012943.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:477226-479403:- | gene-YKR018C_MUCL42920 | rna-NM_001179808.1_MUCL42920 | cds-NP_012943.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:473712-475889:- | gene-YKR018C_NCIM3186 | rna-NM_001179808.1_NCIM3186 | cds-NP_012943.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:471658-473835:- | gene-YKR018C_NCYC1407 | rna-NM_001179808.1_NCYC1407 | cds-NP_012943.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:496644-498821:- | gene-YKR018C_PE2H3 | rna-NM_001179808.1_PE2H3 | cds-NP_012943.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:481367-483544:- | gene-YKR018C_PE2H4 | rna-NM_001179808.1_PE2H4 | cds-NP_012943.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:473723-475900:- | gene-YKR018C_S288C | rna-NM_001179808.1_S288C | cds-NP_012943.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000078.1:37849-40026:+ | gene-YKR018C_SA1 | rna-NM_001179808.1_SA1 | cds-NP_012943.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:472047-474224:- | gene-YKR018C_ThermosaccDry | rna-NM_001179808.1_ThermosaccDry | cds-NP_012943.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:471664-473841:- | gene-YKR018C_VR1 | rna-NM_001179808.1_VR1 | cds-NP_012943.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:470094-472271:- | gene-YKR018C_ZTW1 | rna-NM_001179808.1_ZTW1 | cds-NP_012943.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:495534-497711:- | gene-YKR018C_Sparadoxus | rna-NM_001179808.1_Sparadoxus | cds-NP_012943.1_Sparadoxus | 91.0 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |