Gene name: YKL050C
Reference locus (S288C): YKL050C
Gene biotype: protein_coding
Description: Uncharacterized protein YKL050C; Protein of unknown function; the YKL050W protein is a target of the SCFCdc4 ubiquitin ligase complex and YKL050W transcription is regulated by Azf1p; YKL050C has a paralog, EIS1, that arose from the whole genome duplication
Top 10 interactors (score): YKR005C (0.82); YKL162C (0.779); EFM2 (0.748); DIT1 (0.7); VAC14 (0.7); LST4 (0.695); GAT1 (0.678); RPL26B (0.654); DAL81 (0.574); WHI5 (0.502); TPK3 (0.502); MEP2 (0.483)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:328851-331619:- | gene-YKL050C_AKU4011 | rna-NM_001179616.1_AKU4011 | cds-NP_012874.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000113.1:312388-315156:+ | gene-YKL050C_BG1 | rna-NM_001179616.1_BG1 | cds-NP_012874.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:347879-350647:- | gene-YKL050C_Bruggeman | rna-NM_001179616.1_Bruggeman | cds-NP_012874.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:344310-347078:- | gene-YKL050C_CAT1 | rna-NM_001179616.1_CAT1 | cds-NP_012874.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:341582-344350:- | gene-YKL050C_CBS1585 | rna-NM_001179616.1_CBS1585 | cds-NP_012874.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:339711-342479:- | gene-YKL050C_CBS436 | rna-NM_001179616.1_CBS436 | cds-NP_012874.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:325715-328483:- | gene-YKL050C_CBS6412 | rna-NM_001179616.1_CBS6412 | cds-NP_012874.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:341543-344311:- | gene-YKL050C_CBS6413 | rna-NM_001179616.1_CBS6413 | cds-NP_012874.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:342511-345279:- | gene-YKL050C_CENPK1137D | rna-NM_001179616.1_CENPK1137D | cds-NP_012874.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:339516-342305:- | gene-YKL050C_EthanolRed | rna-NM_001179616.1_EthanolRed | cds-NP_012874.1_EthanolRed | 98.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:340329-343118:- | gene-YKL050C_FaliES1 | rna-NM_001179616.1_FaliES1 | cds-NP_012874.1_FaliES1 | 98.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000080.1:45275-48043:- | gene-YKL050C_JAY291 | rna-NM_001179616.1_JAY291 | cds-NP_012874.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:348780-351548:- | gene-YKL050C_MUCL30387 | rna-NM_001179616.1_MUCL30387 | cds-NP_012874.1_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:343669-346437:- | gene-YKL050C_MUCL30388 | rna-NM_001179616.1_MUCL30388 | cds-NP_012874.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:340878-343646:- | gene-YKL050C_MUCL39482 | rna-NM_001179616.1_MUCL39482 | cds-NP_012874.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:345734-348502:- | gene-YKL050C_MUCL42920 | rna-NM_001179616.1_MUCL42920 | cds-NP_012874.1_MUCL42920 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:342841-345609:- | gene-YKL050C_NCIM3186 | rna-NM_001179616.1_NCIM3186 | cds-NP_012874.1_NCIM3186 | 98.6 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:341073-343841:- | gene-YKL050C_NCYC1407 | rna-NM_001179616.1_NCYC1407 | cds-NP_012874.1_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:365618-368386:- | gene-YKL050C_PE2H3 | rna-NM_001179616.1_PE2H3 | cds-NP_012874.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:350357-353125:- | gene-YKL050C_PE2H4 | rna-NM_001179616.1_PE2H4 | cds-NP_012874.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:342852-345620:- | gene-YKL050C_S288C | rna-NM_001179616.1_S288C | cds-NP_012874.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000027.1:20958-23726:- | gene-YKL050C_SA1 | rna-NM_001179616.1_SA1 | cds-NP_012874.1_SA1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:341519-344308:- | gene-YKL050C_ThermosaccDry | rna-NM_001179616.1_ThermosaccDry | cds-NP_012874.1_ThermosaccDry | 98.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:340686-343454:- | gene-YKL050C_VR1 | rna-NM_001179616.1_VR1 | cds-NP_012874.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:339552-342320:- | gene-YKL050C_ZTW1 | rna-NM_001179616.1_ZTW1 | cds-NP_012874.1_ZTW1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:358744-361509:- | gene-YKL050C_Sparadoxus | rna-NM_001179616.1_Sparadoxus | cds-NP_012874.1_Sparadoxus | 83.0 | 99.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |