Gene name: YKE2
Reference locus (S288C): YLR200W
Gene biotype: protein_coding
Description: Prefoldin subunit 6; Subunit of the heterohexameric Gim/prefoldin protein complex; involved in the folding of alpha-tubulin, beta-tubulin, and actin; prefoldin complex also localizes to chromatin of actively transcribed genes in the nucleus and facilitates transcriptional elongation
Top 10 interactors (score): PAC10 (0.999); GIM5 (0.999); GIM4 (0.999); GIM3 (0.999); PFD1 (0.998); BUD27 (0.971); RPB5 (0.939); SDD2 (0.924); TCP1 (0.901); TRP5 (0.89); TUB3 (0.875); PRE8 (0.858); CCT2 (0.846); NHP2 (0.829); NIP100 (0.823); CIN2 (0.818); CIN1 (0.813); RVB1 (0.794); ACT1 (0.781); CCT3 (0.772)
Homologues (species, bitscore): PFDN6 (Homo sapiens, 81.6); Pfdn6 (Mus musculus, 82.8); pfdn6 (Danio rerio, 73.2); pfdn6 (Xenopus tropicalis, 82.8); CG7770 (Drosophila melanogaster, 59.3); pfd-6 (Caenorhabditis elegans, 70.1); PFD6 (Arabidopsis thaliana, 62.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:503128-503472:+ | gene-YLR200W_AKU4011 | rna-NM_001182087.1_AKU4011 | cds-NP_013301.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000177.1:60310-60654:+ | gene-YLR200W_BG1 | rna-NM_001182087.1_BG1 | cds-NP_013301.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:543383-543727:+ | gene-YLR200W_Bruggeman | rna-NM_001182087.1_Bruggeman | cds-NP_013301.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:542976-543320:+ | gene-YLR200W_CAT1 | rna-NM_001182087.1_CAT1 | cds-NP_013301.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:538625-538969:+ | gene-YLR200W_CBS1585 | rna-NM_001182087.1_CBS1585 | cds-NP_013301.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:528772-529116:+ | gene-YLR200W_CBS436 | rna-NM_001182087.1_CBS436 | cds-NP_013301.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:507182-507526:+ | gene-YLR200W_CBS6412 | rna-NM_001182087.1_CBS6412 | cds-NP_013301.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:538917-539261:+ | gene-YLR200W_CBS6413 | rna-NM_001182087.1_CBS6413 | cds-NP_013301.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:533657-534001:+ | gene-YLR200W_CENPK1137D | rna-NM_001182087.1_CENPK1137D | cds-NP_013301.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:502655-502999:+ | gene-YLR200W_EthanolRed | rna-NM_001182087.1_EthanolRed | cds-NP_013301.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:531582-531926:+ | gene-YLR200W_FaliES1 | rna-NM_001182087.1_FaliES1 | cds-NP_013301.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000004.1:58486-58830:+ | gene-YLR200W_JAY291 | rna-NM_001182087.1_JAY291 | cds-NP_013301.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:543401-543745:+ | gene-YLR200W_MUCL30387 | rna-NM_001182087.1_MUCL30387 | cds-NP_013301.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:548336-548680:+ | gene-YLR200W_MUCL30388 | rna-NM_001182087.1_MUCL30388 | cds-NP_013301.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:539606-539950:+ | gene-YLR200W_MUCL39482 | rna-NM_001182087.1_MUCL39482 | cds-NP_013301.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:540105-540449:+ | gene-YLR200W_MUCL42920 | rna-NM_001182087.1_MUCL42920 | cds-NP_013301.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:548986-549330:+ | gene-YLR200W_NCIM3186 | rna-NM_001182087.1_NCIM3186 | cds-NP_013301.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:532035-532379:+ | gene-YLR200W_NCYC1407 | rna-NM_001182087.1_NCYC1407 | cds-NP_013301.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:536275-536619:+ | gene-YLR200W_PE2H3 | rna-NM_001182087.1_PE2H3 | cds-NP_013301.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:536019-536363:+ | gene-YLR200W_PE2H4 | rna-NM_001182087.1_PE2H4 | cds-NP_013301.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:549012-549356:+ | gene-YLR200W_S288C | rna-NM_001182087.1_S288C | cds-NP_013301.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000042.1:58543-58887:+ | gene-YLR200W_SA1 | rna-NM_001182087.1_SA1 | cds-NP_013301.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:534085-534429:+ | gene-YLR200W_ThermosaccDry | rna-NM_001182087.1_ThermosaccDry | cds-NP_013301.1_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:545384-545728:+ | gene-YLR200W_VR1 | rna-NM_001182087.1_VR1 | cds-NP_013301.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000024.1:58373-58717:+ | gene-YLR200W_ZTW1 | rna-NM_001182087.1_ZTW1 | cds-NP_013301.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:520160-520504:+ | gene-YLR200W_Sparadoxus | rna-NM_001182087.1_Sparadoxus | cds-NP_013301.1_Sparadoxus | 90.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |