YJU2 (YKL095W)


Gene profile

Gene name: YJU2
Reference locus (S288C): YKL095W
Gene biotype: protein_coding

Description: Mrna splicing protein yju2; Essential protein required for pre-mRNA splicing; associates transiently with the spliceosomal NTC ("nineteen complex") and acts after Prp2p to promote the first catalytic reaction of splicing

Top 10 interactors (score): CWC25 (0.999); PRP19 (0.999); SYF2 (0.999); CWC2 (0.999); CEF1 (0.999); CDC40 (0.999); SNT309 (0.999); CLF1 (0.999); CWC22 (0.999); PRP46 (0.999); PRP16 (0.999); SYF1 (0.999); ISY1 (0.999); PRP45 (0.999); CWC15 (0.997); SNU114 (0.996); BRR2 (0.995); SLU7 (0.995); PRP22 (0.995); ECM2 (0.994)

Homologues (species, bitscore): CCDC94 (Homo sapiens, 116.3); Ccdc94 (Mus musculus, 116.7); ccdc94 (Danio rerio, 118.2); ccdc94 (Xenopus tropicalis, 88.6); CG8435 (Drosophila melanogaster, 129.4); F37C12.1 (Caenorhabditis elegans, 98.2); AT1G17130 (Arabidopsis thaliana, 105.9)

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser


Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005305.1:248835-249671:+ gene-YKL095W_AKU4011 rna-NM_001179661.1_AKU4011 cds-NP_012828.1_AKU4011 99.6 100.0 Verified 1 1 1 False True False False False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000030.1:225956-226792:+ gene-YKL095W_BG1 rna-NM_001179661.1_BG1 cds-NP_012828.1_BG1 99.4 100.0 Verified 1 1 1 True True False False False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005513.1:267008-267844:+ gene-YKL095W_Bruggeman rna-NM_001179661.1_Bruggeman cds-NP_012828.1_Bruggeman 99.7 100.0 Verified 1 1 1 False True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005529.1:261802-262638:+ gene-YKL095W_CAT1 rna-NM_001179661.1_CAT1 cds-NP_012828.1_CAT1 99.4 100.0 Verified 1 1 1 True True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005369.1:261077-261913:+ gene-YKL095W_CBS1585 rna-NM_001179661.1_CBS1585 cds-NP_012828.1_CBS1585 99.6 100.0 Verified 1 1 1 False True False False False
CBS436 GCA_001738355.1 Sake Asia CM005353.1:259665-260501:+ gene-YKL095W_CBS436 rna-NM_001179661.1_CBS436 cds-NP_012828.1_CBS436 99.4 100.0 Mismatch 1 1 1 True True False False False
CBS6412 GCA_001738345.1 Sake Asia CM005337.1:245705-246541:+ gene-YKL095W_CBS6412 rna-NM_001179661.1_CBS6412 cds-NP_012828.1_CBS6412 99.7 100.0 Mismatch 1 1 1 True True False False False
CBS6413 GCA_001738265.1 Sake Asia CM005321.1:261533-262369:+ gene-YKL095W_CBS6413 rna-NM_001179661.1_CBS6413 cds-NP_012828.1_CBS6413 99.8 100.0 Verified 1 1 1 True True False False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001532.1:261918-262754:+ gene-YKL095W_CENPK1137D rna-NM_001179661.1_CENPK1137D cds-NP_012828.1_CENPK1137D 100.0 100.0 Verified 1 1 1 True True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005481.1:259528-260364:+ gene-YKL095W_EthanolRed rna-NM_001179661.1_EthanolRed cds-NP_012828.1_EthanolRed 99.8 100.0 Verified 1 1 1 True True False False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005545.1:260341-261177:+ gene-YKL095W_FaliES1 rna-NM_001179661.1_FaliES1 cds-NP_012828.1_FaliES1 99.8 100.0 Verified 1 1 1 True True False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000357.1:82666-83502:+ gene-YKL095W_JAY291 rna-NM_001179661.1_JAY291 cds-NP_012828.1_JAY291 99.2 100.0 Verified 1 1 1 False True False False False
MUCL30387 GCA_001738515.1 Bread Europe CM005417.1:268807-269643:+ gene-YKL095W_MUCL30387 rna-NM_001179661.1_MUCL30387 cds-NP_012828.1_MUCL30387 99.8 100.0 Verified 1 1 1 False True False False False
MUCL30388 GCA_001738495.1 Bread Europe CM005449.1:263203-264039:+ gene-YKL095W_MUCL30388 rna-NM_001179661.1_MUCL30388 cds-NP_012828.1_MUCL30388 100.0 100.0 Verified 1 1 1 True True False False False
MUCL39482 GCA_001738235.1 Sake Asia CM005289.1:260862-261698:+ gene-YKL095W_MUCL39482 rna-NM_001179661.1_MUCL39482 cds-NP_012828.1_MUCL39482 99.7 100.0 Verified 1 1 1 False True False False False
MUCL42920 GCA_001738485.1 Bread Europe CM005433.1:265500-266336:+ gene-YKL095W_MUCL42920 rna-NM_001179661.1_MUCL42920 cds-NP_012828.1_MUCL42920 99.8 100.0 Verified 1 1 1 False True False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011820.1:262266-263102:+ gene-YKL095W_NCIM3186 rna-NM_001179661.1_NCIM3186 cds-NP_012828.1_NCIM3186 99.8 100.0 Verified 1 1 1 False True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005273.1:261056-261892:+ gene-YKL095W_NCYC1407 rna-NM_001179661.1_NCYC1407 cds-NP_012828.1_NCYC1407 99.6 100.0 Verified 1 1 1 False True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994150.1:268141-268977:+ gene-YKL095W_PE2H3 rna-NM_001179661.1_PE2H3 cds-NP_012828.1_PE2H3 99.2 100.0 Verified 1 1 1 False True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999882.1:264428-265264:+ gene-YKL095W_PE2H4 rna-NM_001179661.1_PE2H4 cds-NP_012828.1_PE2H4 99.4 100.0 Verified 1 1 1 True True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001143.9:262277-263113:+ gene-YKL095W_S288C rna-NM_001179661.1_S288C cds-NP_012828.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000008.1:178395-179231:+ gene-YKL095W_SA1 rna-NM_001179661.1_SA1 cds-NP_012828.1_SA1 99.6 100.0 Verified 1 1 1 True True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005497.1:261046-261882:+ gene-YKL095W_ThermosaccDry rna-NM_001179661.1_ThermosaccDry cds-NP_012828.1_ThermosaccDry 99.8 100.0 Verified 1 1 1 True True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005465.1:260402-261238:+ gene-YKL095W_VR1 rna-NM_001179661.1_VR1 cds-NP_012828.1_VR1 99.4 100.0 Verified 1 1 1 True True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000022.1:259607-260443:+ gene-YKL095W_ZTW1 rna-NM_001179661.1_ZTW1 cds-NP_012828.1_ZTW1 99.7 100.0 Verified 1 1 1 False True False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047497.1:276596-277432:+ gene-YKL095W_Sparadoxus rna-NM_001179661.1_Sparadoxus cds-NP_012828.1_Sparadoxus 88.1 100.0 Verified 1 1 1 False True False False False

Additional files