Gene name: YJR084W
Reference locus (S288C): YJR084W
Gene biotype: protein_coding
Description: Cop9 signalosome complex subunit 12; Protein that forms a complex with Thp3p; may have a role in transcription elongation and/or mRNA splicing; identified as a COP9 signalosome component but phenotype and interactions suggest it may not be involved with the signalosome
Top 10 interactors (score): SEM1 (0.998); THP3 (0.997); SAC3 (0.997); CDC31 (0.996); CSN9 (0.929); RPN3 (0.92); THP1 (0.92); CSI1 (0.914); PCI8 (0.874); RRI2 (0.836); MEX67 (0.83); RPN7 (0.805); RRI1 (0.799); CBC2 (0.788); RPN12 (0.773); RPN5 (0.741); PRP21 (0.681); YNL010W (0.675); SMX2 (0.674); RNH1 (0.662)
Homologues (species, bitscore): PCID2 (Homo sapiens, 85.9); Pcid2 (Mus musculus, 84.3); pcid2 (Danio rerio, 84.0); pcid2 (Xenopus tropicalis, 54.7); PCID2 (Drosophila melanogaster, 61.6); C27F2.10 (Caenorhabditis elegans, 79.3); EER5 (Arabidopsis thaliana, 55.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:555259-556530:+ | gene-YJR084W_AKU4011 | rna-NM_001181741.1_AKU4011 | cds-NP_012617.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:51040-52311:- | gene-YJR084W_BG1 | rna-NM_001181741.1_BG1 | cds-NP_012617.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:568775-570046:+ | gene-YJR084W_Bruggeman | rna-NM_001181741.1_Bruggeman | cds-NP_012617.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:573176-574447:+ | gene-YJR084W_CAT1 | rna-NM_001181741.1_CAT1 | cds-NP_012617.1_CAT1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:567323-568594:+ | gene-YJR084W_CBS1585 | rna-NM_001181741.1_CBS1585 | cds-NP_012617.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:585398-586669:+ | gene-YJR084W_CBS436 | rna-NM_001181741.1_CBS436 | cds-NP_012617.1_CBS436 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:554472-555743:+ | gene-YJR084W_CBS6412 | rna-NM_001181741.1_CBS6412 | cds-NP_012617.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:556767-558038:+ | gene-YJR084W_CBS6413 | rna-NM_001181741.1_CBS6413 | cds-NP_012617.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:566089-567360:+ | gene-YJR084W_CENPK1137D | rna-NM_001181741.1_CENPK1137D | cds-NP_012617.1_CENPK1137D | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:559651-560922:+ | gene-YJR084W_EthanolRed | rna-NM_001181741.1_EthanolRed | cds-NP_012617.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:571117-572388:+ | gene-YJR084W_FaliES1 | rna-NM_001181741.1_FaliES1 | cds-NP_012617.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000054.1:116996-118267:- | gene-YJR084W_JAY291 | rna-NM_001181741.1_JAY291 | cds-NP_012617.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:569304-570575:+ | gene-YJR084W_MUCL30387 | rna-NM_001181741.1_MUCL30387 | cds-NP_012617.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:566600-567871:+ | gene-YJR084W_MUCL30388 | rna-NM_001181741.1_MUCL30388 | cds-NP_012617.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:560784-562055:+ | gene-YJR084W_MUCL39482 | rna-NM_001181741.1_MUCL39482 | cds-NP_012617.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:565031-566302:+ | gene-YJR084W_MUCL42920 | rna-NM_001181741.1_MUCL42920 | cds-NP_012617.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:583712-584983:+ | gene-YJR084W_NCIM3186 | rna-NM_001181741.1_NCIM3186 | cds-NP_012617.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:558349-559620:+ | gene-YJR084W_NCYC1407 | rna-NM_001181741.1_NCYC1407 | cds-NP_012617.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:576243-577514:+ | gene-YJR084W_PE2H3 | rna-NM_001181741.1_PE2H3 | cds-NP_012617.1_PE2H3 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:569937-571208:+ | gene-YJR084W_PE2H4 | rna-NM_001181741.1_PE2H4 | cds-NP_012617.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:583733-585004:+ | gene-YJR084W_S288C | rna-NM_001181741.1_S288C | cds-NP_012617.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000038.1:42313-43584:+ | gene-YJR084W_SA1 | rna-NM_001181741.1_SA1 | cds-NP_012617.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:565050-566321:+ | gene-YJR084W_ThermosaccDry | rna-NM_001181741.1_ThermosaccDry | cds-NP_012617.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:567231-568502:+ | gene-YJR084W_VR1 | rna-NM_001181741.1_VR1 | cds-NP_012617.1_VR1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:544448-545719:+ | gene-YJR084W_ZTW1 | rna-NM_001181741.1_ZTW1 | cds-NP_012617.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:577825-579096:+ | gene-YJR084W_Sparadoxus | rna-NM_001181741.1_Sparadoxus | cds-NP_012617.1_Sparadoxus | 89.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |