Gene name: YJR056C
Reference locus (S288C): YJR056C
Gene biotype: protein_coding
Description: Uncharacterized protein YJR056C; Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to both the cytoplasm and the nucleus; relative distribution to the nucleus increases upon DNA replication stress
Top 10 interactors (score): HIT1 (0.937); YJL022W (0.919); YJL027C (0.919); YJL028W (0.919); FMP33 (0.919); VTH2 (0.771); FIP1 (0.749); REE1 (0.747); SOR1 (0.714); URA2 (0.61); TEM1 (0.61); TIM17 (0.573); VPS35 (0.572); RPB4 (0.572); BOI1 (0.446); ABP140 (0.429)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:513323-514033:- | gene-YJR056C_AKU4011 | rna-NM_001181714.3_AKU4011 | cds-NP_012590.3_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:93488-94198:+ | gene-YJR056C_BG1 | rna-NM_001181714.3_BG1 | cds-NP_012590.3_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:526829-527539:- | gene-YJR056C_Bruggeman | rna-NM_001181714.3_Bruggeman | cds-NP_012590.3_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:531245-531955:- | gene-YJR056C_CAT1 | rna-NM_001181714.3_CAT1 | cds-NP_012590.3_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:525387-526097:- | gene-YJR056C_CBS1585 | rna-NM_001181714.3_CBS1585 | cds-NP_012590.3_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:543559-544269:- | gene-YJR056C_CBS436 | rna-NM_001181714.3_CBS436 | cds-NP_012590.3_CBS436 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:512536-513246:- | gene-YJR056C_CBS6412 | rna-NM_001181714.3_CBS6412 | cds-NP_012590.3_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:514832-515542:- | gene-YJR056C_CBS6413 | rna-NM_001181714.3_CBS6413 | cds-NP_012590.3_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:524253-524963:- | gene-YJR056C_CENPK1137D | rna-NM_001181714.3_CENPK1137D | cds-NP_012590.3_CENPK1137D | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:517717-518427:- | gene-YJR056C_EthanolRed | rna-NM_001181714.3_EthanolRed | cds-NP_012590.3_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:529183-529893:- | gene-YJR056C_FaliES1 | rna-NM_001181714.3_FaliES1 | cds-NP_012590.3_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000054.1:159394-160104:+ | gene-YJR056C_JAY291 | rna-NM_001181714.3_JAY291 | cds-NP_012590.3_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:527367-528077:- | gene-YJR056C_MUCL30387 | rna-NM_001181714.3_MUCL30387 | cds-NP_012590.3_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:524642-525352:- | gene-YJR056C_MUCL30388 | rna-NM_001181714.3_MUCL30388 | cds-NP_012590.3_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:518849-519559:- | gene-YJR056C_MUCL39482 | rna-NM_001181714.3_MUCL39482 | cds-NP_012590.3_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:523077-523787:- | gene-YJR056C_MUCL42920 | rna-NM_001181714.3_MUCL42920 | cds-NP_012590.3_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:541771-542481:- | gene-YJR056C_NCIM3186 | rna-NM_001181714.3_NCIM3186 | cds-NP_012590.3_NCIM3186 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:516164-516874:- | gene-YJR056C_NCYC1407 | rna-NM_001181714.3_NCYC1407 | cds-NP_012590.3_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:534408-535118:- | gene-YJR056C_PE2H3 | rna-NM_001181714.3_PE2H3 | cds-NP_012590.3_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:528104-528814:- | gene-YJR056C_PE2H4 | rna-NM_001181714.3_PE2H4 | cds-NP_012590.3_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:541792-542502:- | gene-YJR056C_S288C | rna-NM_001181714.3_S288C | cds-NP_012590.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000038.1:473-1183:- | gene-YJR056C_SA1 | rna-NM_001181714.3_SA1 | cds-NP_012590.3_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:523113-523823:- | gene-YJR056C_ThermosaccDry | rna-NM_001181714.3_ThermosaccDry | cds-NP_012590.3_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:525094-525804:- | gene-YJR056C_VR1 | rna-NM_001181714.3_VR1 | cds-NP_012590.3_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:502504-503214:- | gene-YJR056C_ZTW1 | rna-NM_001181714.3_ZTW1 | cds-NP_012590.3_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:536036-536740:- | gene-YJR056C_Sparadoxus | rna-NM_001181714.3_Sparadoxus | cds-NP_012590.3_Sparadoxus | 87.2 | 99.1 | Verified | 1 | 1 | 1 | False | True | False | False | False |