Gene name: YJR029W
Reference locus (S288C): YJR029W
Gene biotype: protein_coding
Description: Transposon Ty1-JR2 Gag-Pol polyprotein; Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes
Top 10 interactors (score): SMX2 (0.693); CST26 (0.673); MOT3 (0.598); SNP1 (0.53)
Homologues (species, bitscore): CRK8 (Arabidopsis thaliana, 95.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CAT1 | GCA_001738705.1 | Bioethanol | South America | MBWC01000293.1:1-1307:+ | gene-YJR029W_CAT1 | rna-NM_001181687.2_CAT1 | cds-NP_012562.1_CAT1 | 24.6 | 24.8 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000298.1:1-817:+ | gene-YJR029W_JAY291 | rna-NM_001181687.2_JAY291 | cds-NP_012562.1_JAY291 | 15.4 | 15.5 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:478323-483591:+ | gene-YJR029W_NCIM3186 | rna-NM_001181687.2_NCIM3186 | cds-NP_012562.1_NCIM3186 | 90.2 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:430216-435484:- | gene-YJR029W_PE2H3 | rna-NM_001181687.2_PE2H3 | cds-NP_012562.1_PE2H3 | 99.2 | 99.9 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:429575-434843:- | gene-YJR029W_PE2H4 | rna-NM_001181687.2_PE2H4 | cds-NP_012562.1_PE2H4 | 99.2 | 99.9 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:478344-483612:+ | gene-YJR029W_S288C | rna-NM_001181687.2_S288C | cds-NP_012562.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | MBVZ01000070.1:111-1346:- | gene-YJR029W_VR1 | rna-NM_001181687.2_VR1 | cds-NP_012562.1_VR1 | 23.3 | 23.4 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:213706-218974:- | gene-YJR029W_Sparadoxus | rna-NM_001181687.2_Sparadoxus | cds-NP_012562.1_Sparadoxus | 91.6 | 99.9 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |