YJR028W (YJR028W)

Gene profile

Gene name: YJR028W
Reference locus (S288C): YJR028W
Gene biotype: protein_coding

Description: Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag

Top 10 interactors (score): YAR009C (0.711); ATP20 (0.575); UBX6 (0.565); PUP2 (0.499); SCL1 (0.485); ATP7 (0.453); DIT1 (0.451); VMA10 (0.45); PRE6 (0.45); FAT1 (0.45)

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011819.1:478323-479645:+ gene-YJR028W_NCIM3186 rna-NM_001181686.1_NCIM3186 cds-NP_012563.1_NCIM3186 79.2 100.0 Mismatch 1 1 0 False False True False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994143.1:434162-435484:- gene-YJR028W_PE2H3 rna-NM_001181686.1_PE2H3 cds-NP_012563.1_PE2H3 98.2 99.7 Mismatch 1 1 1 False True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999875.1:433521-434843:- gene-YJR028W_PE2H4 rna-NM_001181686.1_PE2H4 cds-NP_012563.1_PE2H4 98.2 99.7 Mismatch 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001142.9:478344-479666:+ gene-YJR028W_S288C rna-NM_001181686.1_S288C cds-NP_012563.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047501.1:217652-218974:- gene-YJR028W_Sparadoxus rna-NM_001181686.1_Sparadoxus cds-NP_012563.1_Sparadoxus 98.3 100.0 Mismatch 1 1 1 False True False False False

Additional files