Gene name: YJR028W
Reference locus (S288C): YJR028W
Gene biotype: protein_coding
Description: Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag
Top 10 interactors (score): YAR009C (0.711); ATP20 (0.575); UBX6 (0.565); PUP2 (0.499); SCL1 (0.485); ATP7 (0.453); DIT1 (0.451); VMA10 (0.45); PRE6 (0.45); FAT1 (0.45)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:478323-479645:+ | gene-YJR028W_NCIM3186 | rna-NM_001181686.1_NCIM3186 | cds-NP_012563.1_NCIM3186 | 79.2 | 100.0 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:434162-435484:- | gene-YJR028W_PE2H3 | rna-NM_001181686.1_PE2H3 | cds-NP_012563.1_PE2H3 | 98.2 | 99.7 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:433521-434843:- | gene-YJR028W_PE2H4 | rna-NM_001181686.1_PE2H4 | cds-NP_012563.1_PE2H4 | 98.2 | 99.7 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:478344-479666:+ | gene-YJR028W_S288C | rna-NM_001181686.1_S288C | cds-NP_012563.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:217652-218974:- | gene-YJR028W_Sparadoxus | rna-NM_001181686.1_Sparadoxus | cds-NP_012563.1_Sparadoxus | 98.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |