Gene name: YJL113W
Reference locus (S288C): YJL113W
Gene biotype: protein_coding
Description: Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes
Top 10 interactors (score): Unknown
Homologues (species, bitscore): ENSDARP00000110408 (Danio rerio, 51.6); CRK8 (Arabidopsis thaliana, 107.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | MBVO01000039.1:999-5646:+ | gene-YJL113W_AKU4011 | rna-NM_001181546.3_AKU4011 | cds-NP_012421.2_AKU4011 | 99.8 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | MBVY01000184.1:312-4959:- | gene-YJL113W_Bruggeman | rna-NM_001181546.3_Bruggeman | cds-NP_012421.2_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | MBVQ01000071.1:1000-5647:+ | gene-YJL113W_CBS6412 | rna-NM_001181546.3_CBS6412 | cds-NP_012421.2_CBS6412 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | MBVP01000090.1:1000-5647:+ | gene-YJL113W_CBS6413 | rna-NM_001181546.3_CBS6413 | cds-NP_012421.2_CBS6413 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000087.1:3-3193:+ | gene-YJL113W_JAY291 | rna-NM_001181546.3_JAY291 | cds-NP_012421.2_JAY291 | 64.3 | 67.9 | Unannotated | 1 | 1 | 0 | False | False | True | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | MBVX01000070.1:1001-5648:+ | gene-YJL113W_MUCL30387 | rna-NM_001181546.3_MUCL30387 | cds-NP_012421.2_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | MBVW01000079.1:311-4958:- | gene-YJL113W_MUCL30388 | rna-NM_001181546.3_MUCL30388 | cds-NP_012421.2_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | MBVN01000003.1:391-5038:- | gene-YJL113W_MUCL39482 | rna-NM_001181546.3_MUCL39482 | cds-NP_012421.2_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | MBVV01000285.1:1000-5647:+ | gene-YJL113W_MUCL42920 | rna-NM_001181546.3_MUCL42920 | cds-NP_012421.2_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:198657-203304:+ | gene-YJL113W_NCIM3186 | rna-NM_001181546.3_NCIM3186 | cds-NP_012421.2_NCIM3186 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | MBVM01000049.1:311-4958:- | gene-YJL113W_NCYC1407 | rna-NM_001181546.3_NCYC1407 | cds-NP_012421.2_NCYC1407 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:435054-438948:+ | gene-YJL113W_PE2H3 | rna-NM_001181546.3_PE2H3 | cds-NP_012421.2_PE2H3 | 70.1 | 80.1 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:198678-203325:+ | gene-YJL113W_S288C | rna-NM_001181546.3_S288C | cds-NP_012421.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |