Gene name: YIP5
Reference locus (S288C): YGL161C
Gene biotype: protein_coding
Description: Protein that interacts with Rab GTPases; localized to late Golgi vesicles; computational analysis of large-scale protein-protein interaction data suggests a possible role in vesicle-mediated transport
Top 10 interactors (score): YIP4 (0.999); YIP1 (0.988); TVP23 (0.902); YIP3 (0.792); TVP15 (0.78); YIF1 (0.776); PPS1 (0.768); YOS1 (0.762); YPT1 (0.746); URA3 (0.745); TVP18 (0.699); YPT31 (0.605); GCS1 (0.601); YOP1 (0.588); SEC27 (0.575); VAM7 (0.574); CCC2 (0.571); PCA1 (0.571); EMP70 (0.545); MDM1 (0.526)
Homologues (species, bitscore): YIPF2 (Homo sapiens, 63.5); Yipf2 (Mus musculus, 68.2); yipf2 (Danio rerio, 50.4); yipf1 (Xenopus tropicalis, 54.3); Y25C1A.7 (Caenorhabditis elegans, 53.1); AT5G27490 (Arabidopsis thaliana, 54.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:201799-202731:- | gene-YGL161C_AKU4011 | rna-NM_001181026.3_AKU4011 | cds-NP_011354.3_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000132.1:207673-208605:+ | gene-YGL161C_BG1 | rna-NM_001181026.3_BG1 | cds-NP_011354.3_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:203944-204876:- | gene-YGL161C_Bruggeman | rna-NM_001181026.3_Bruggeman | cds-NP_011354.3_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:199793-200725:- | gene-YGL161C_CAT1 | rna-NM_001181026.3_CAT1 | cds-NP_011354.3_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:204935-205867:- | gene-YGL161C_CBS1585 | rna-NM_001181026.3_CBS1585 | cds-NP_011354.3_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:199777-200709:- | gene-YGL161C_CBS436 | rna-NM_001181026.3_CBS436 | cds-NP_011354.3_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:191391-192323:- | gene-YGL161C_CBS6412 | rna-NM_001181026.3_CBS6412 | cds-NP_011354.3_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:199240-200172:- | gene-YGL161C_CBS6413 | rna-NM_001181026.3_CBS6413 | cds-NP_011354.3_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:199472-200404:- | gene-YGL161C_CENPK1137D | rna-NM_001181026.3_CENPK1137D | cds-NP_011354.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:191596-192528:- | gene-YGL161C_EthanolRed | rna-NM_001181026.3_EthanolRed | cds-NP_011354.3_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:192842-193774:- | gene-YGL161C_FaliES1 | rna-NM_001181026.3_FaliES1 | cds-NP_011354.3_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000090.1:42998-43930:- | gene-YGL161C_JAY291 | rna-NM_001181026.3_JAY291 | cds-NP_011354.3_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:201168-202100:- | gene-YGL161C_MUCL30387 | rna-NM_001181026.3_MUCL30387 | cds-NP_011354.3_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:204283-205215:- | gene-YGL161C_MUCL30388 | rna-NM_001181026.3_MUCL30388 | cds-NP_011354.3_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:201962-202894:- | gene-YGL161C_MUCL39482 | rna-NM_001181026.3_MUCL39482 | cds-NP_011354.3_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:204507-205439:- | gene-YGL161C_MUCL42920 | rna-NM_001181026.3_MUCL42920 | cds-NP_011354.3_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:199210-200142:- | gene-YGL161C_NCIM3186 | rna-NM_001181026.3_NCIM3186 | cds-NP_011354.3_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:193427-194359:- | gene-YGL161C_NCYC1407 | rna-NM_001181026.3_NCYC1407 | cds-NP_011354.3_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:195300-196232:- | gene-YGL161C_PE2H3 | rna-NM_001181026.3_PE2H3 | cds-NP_011354.3_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:194860-195792:- | gene-YGL161C_PE2H4 | rna-NM_001181026.3_PE2H4 | cds-NP_011354.3_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:199210-200142:- | gene-YGL161C_S288C | rna-NM_001181026.3_S288C | cds-NP_011354.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000067.1:58969-59901:- | gene-YGL161C_SA1 | rna-NM_001181026.3_SA1 | cds-NP_011354.3_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:193071-194003:- | gene-YGL161C_ThermosaccDry | rna-NM_001181026.3_ThermosaccDry | cds-NP_011354.3_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:200214-201146:- | gene-YGL161C_VR1 | rna-NM_001181026.3_VR1 | cds-NP_011354.3_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:191526-192458:- | gene-YGL161C_ZTW1 | rna-NM_001181026.3_ZTW1 | cds-NP_011354.3_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:198312-199241:- | gene-YGL161C_Sparadoxus | rna-NM_001181026.3_Sparadoxus | cds-NP_011354.3_Sparadoxus | 87.6 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |