Gene name: YIP4
Reference locus (S288C): YGL198W
Gene biotype: protein_coding
Description: Protein that interacts with Rab GTPases; localized to late Golgi vesicles; computational analysis of large-scale protein-protein interaction data suggests a possible role in vesicle-mediated transport; Belongs to the YIP1 family
Top 10 interactors (score): YIP5 (0.999); TVP23 (0.98); YIP1 (0.973); YOS1 (0.963); YIF1 (0.96); YIP3 (0.928); YPT1 (0.901); IRC23 (0.873); YGL199C (0.828); YPT10 (0.794); TVP15 (0.775); GCS1 (0.768); TVP18 (0.762); YPT31 (0.749); TVP38 (0.715); YML094C-A (0.711); ERG28 (0.683); YPT6 (0.635); VTC1 (0.623); YOP1 (0.62)
Homologues (species, bitscore): YIPF6 (Homo sapiens, 52.8); Yipf6 (Mus musculus, 53.1); yipf6 (Danio rerio, 52.8); yipf6 (Xenopus tropicalis, 56.2); W02D9.2 (Caenorhabditis elegans, 55.8); AT4G30260 (Arabidopsis thaliana, 59.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:126126-126833:+ | gene-YGL198W_AKU4011 | rna-NM_001181063.1_AKU4011 | cds-NP_011317.2_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000132.1:283585-284292:- | gene-YGL198W_BG1 | rna-NM_001181063.1_BG1 | cds-NP_011317.2_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:127169-127876:+ | gene-YGL198W_Bruggeman | rna-NM_001181063.1_Bruggeman | cds-NP_011317.2_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:123983-124690:+ | gene-YGL198W_CAT1 | rna-NM_001181063.1_CAT1 | cds-NP_011317.2_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:129271-129978:+ | gene-YGL198W_CBS1585 | rna-NM_001181063.1_CBS1585 | cds-NP_011317.2_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:124247-124954:+ | gene-YGL198W_CBS436 | rna-NM_001181063.1_CBS436 | cds-NP_011317.2_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:116041-116748:+ | gene-YGL198W_CBS6412 | rna-NM_001181063.1_CBS6412 | cds-NP_011317.2_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:123576-124283:+ | gene-YGL198W_CBS6413 | rna-NM_001181063.1_CBS6413 | cds-NP_011317.2_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:123773-124480:+ | gene-YGL198W_CENPK1137D | rna-NM_001181063.1_CENPK1137D | cds-NP_011317.2_CENPK1137D | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:116108-116815:+ | gene-YGL198W_EthanolRed | rna-NM_001181063.1_EthanolRed | cds-NP_011317.2_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:117110-117817:+ | gene-YGL198W_FaliES1 | rna-NM_001181063.1_FaliES1 | cds-NP_011317.2_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000397.1:42424-43131:+ | gene-YGL198W_JAY291 | rna-NM_001181063.1_JAY291 | cds-NP_011317.2_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:125606-126313:+ | gene-YGL198W_MUCL30387 | rna-NM_001181063.1_MUCL30387 | cds-NP_011317.2_MUCL30387 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:127944-128651:+ | gene-YGL198W_MUCL30388 | rna-NM_001181063.1_MUCL30388 | cds-NP_011317.2_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:126272-126979:+ | gene-YGL198W_MUCL39482 | rna-NM_001181063.1_MUCL39482 | cds-NP_011317.2_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:128887-129594:+ | gene-YGL198W_MUCL42920 | rna-NM_001181063.1_MUCL42920 | cds-NP_011317.2_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:123591-124298:+ | gene-YGL198W_NCIM3186 | rna-NM_001181063.1_NCIM3186 | cds-NP_011317.2_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:117756-118463:+ | gene-YGL198W_NCYC1407 | rna-NM_001181063.1_NCYC1407 | cds-NP_011317.2_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:119752-120459:+ | gene-YGL198W_PE2H3 | rna-NM_001181063.1_PE2H3 | cds-NP_011317.2_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:119300-120007:+ | gene-YGL198W_PE2H4 | rna-NM_001181063.1_PE2H4 | cds-NP_011317.2_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:123591-124298:+ | gene-YGL198W_S288C | rna-NM_001181063.1_S288C | cds-NP_011317.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000002.1:251207-251914:- | gene-YGL198W_SA1 | rna-NM_001181063.1_SA1 | cds-NP_011317.2_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:117370-118077:+ | gene-YGL198W_ThermosaccDry | rna-NM_001181063.1_ThermosaccDry | cds-NP_011317.2_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:124659-125366:+ | gene-YGL198W_VR1 | rna-NM_001181063.1_VR1 | cds-NP_011317.2_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:115910-116617:+ | gene-YGL198W_ZTW1 | rna-NM_001181063.1_ZTW1 | cds-NP_011317.2_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:122804-123511:+ | gene-YGL198W_Sparadoxus | rna-NM_001181063.1_Sparadoxus | cds-NP_011317.2_Sparadoxus | 88.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |