Gene name: YIP3
Reference locus (S288C): YNL044W
Gene biotype: protein_coding
Description: Prenylated Rab acceptor 1; Protein localized to COPII vesicles; proposed to be involved in ER to Golgi transport; interacts with members of the Rab GTPase family and Yip1p; also interacts with Rtn1p; Belongs to the PRA1 family
Top 10 interactors (score): YIF1 (0.979); YIP1 (0.954); YPT1 (0.953); YIP4 (0.928); YIP5 (0.792); SEC28 (0.781); MUK1 (0.777); YPT10 (0.774); YOS1 (0.774); YPL264C (0.765); YPT31 (0.729); RTN1 (0.711); ERV29 (0.676); PUF3 (0.669); GCD7 (0.645); ATF2 (0.645); PEX14 (0.645); SAR1 (0.632); ERD1 (0.588); YPT7 (0.583)
Homologues (species, bitscore): RABAC1 (Homo sapiens, 60.5); Rabac1 (Mus musculus, 55.5); rabac1 (Danio rerio, 64.3); rabac1 (Xenopus tropicalis, 67.0); CG1418 (Drosophila melanogaster, 58.5); PRA7 (Arabidopsis thaliana, 56.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:533068-533677:+ | gene-YNL044W_AKU4011 | rna-NM_001182883.1_AKU4011 | cds-NP_014354.2_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:437028-437637:+ | gene-YNL044W_BG1 | rna-NM_001182883.1_BG1 | cds-NP_014354.2_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:550178-550787:+ | gene-YNL044W_Bruggeman | rna-NM_001182883.1_Bruggeman | cds-NP_014354.2_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:586740-587349:+ | gene-YNL044W_CAT1 | rna-NM_001182883.1_CAT1 | cds-NP_014354.2_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:533739-534348:+ | gene-YNL044W_CBS1585 | rna-NM_001182883.1_CBS1585 | cds-NP_014354.2_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:601988-602597:+ | gene-YNL044W_CBS436 | rna-NM_001182883.1_CBS436 | cds-NP_014354.2_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:528831-529440:+ | gene-YNL044W_CBS6412 | rna-NM_001182883.1_CBS6412 | cds-NP_014354.2_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:530149-530758:+ | gene-YNL044W_CBS6413 | rna-NM_001182883.1_CBS6413 | cds-NP_014354.2_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:538855-539464:+ | gene-YNL044W_CENPK1137D | rna-NM_001182883.1_CENPK1137D | cds-NP_014354.2_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:535891-536500:+ | gene-YNL044W_EthanolRed | rna-NM_001182883.1_EthanolRed | cds-NP_014354.2_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:526416-527025:+ | gene-YNL044W_FaliES1 | rna-NM_001182883.1_FaliES1 | cds-NP_014354.2_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000040.1:41458-42067:+ | gene-YNL044W_JAY291 | rna-NM_001182883.1_JAY291 | cds-NP_014354.2_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:546512-547121:+ | gene-YNL044W_MUCL30387 | rna-NM_001182883.1_MUCL30387 | cds-NP_014354.2_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:575932-576541:+ | gene-YNL044W_MUCL30388 | rna-NM_001182883.1_MUCL30388 | cds-NP_014354.2_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:531155-531764:+ | gene-YNL044W_MUCL39482 | rna-NM_001182883.1_MUCL39482 | cds-NP_014354.2_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:535227-535836:+ | gene-YNL044W_MUCL42920 | rna-NM_001182883.1_MUCL42920 | cds-NP_014354.2_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:545237-545846:+ | gene-YNL044W_NCIM3186 | rna-NM_001182883.1_NCIM3186 | cds-NP_014354.2_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:533207-533816:+ | gene-YNL044W_NCYC1407 | rna-NM_001182883.1_NCYC1407 | cds-NP_014354.2_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:536375-536984:+ | gene-YNL044W_PE2H3 | rna-NM_001182883.1_PE2H3 | cds-NP_014354.2_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:531450-532059:+ | gene-YNL044W_PE2H4 | rna-NM_001182883.1_PE2H4 | cds-NP_014354.2_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:545268-545877:+ | gene-YNL044W_S288C | rna-NM_001182883.1_S288C | cds-NP_014354.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000024.1:124300-124909:+ | gene-YNL044W_SA1 | rna-NM_001182883.1_SA1 | cds-NP_014354.2_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:527291-527900:+ | gene-YNL044W_ThermosaccDry | rna-NM_001182883.1_ThermosaccDry | cds-NP_014354.2_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:546336-546945:+ | gene-YNL044W_VR1 | rna-NM_001182883.1_VR1 | cds-NP_014354.2_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:436612-437221:+ | gene-YNL044W_ZTW1 | rna-NM_001182883.1_ZTW1 | cds-NP_014354.2_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:542547-543159:+ | gene-YNL044W_Sparadoxus | rna-NM_001182883.1_Sparadoxus | cds-NP_014354.2_Sparadoxus | 92.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |