Gene name: YIP1
Reference locus (S288C): YGR172C
Gene biotype: protein_coding
Description: Integral membrane protein; required for the biogenesis of ER-derived COPII transport vesicles; interacts with Yif1p and Yos1p; localizes to the Golgi, the ER, and COPII vesicles; human homolog YIPF5 can complement yeast yip1 mutant
Top 10 interactors (score): YIF1 (0.999); YPT1 (0.989); YIP5 (0.988); YIP4 (0.973); YOS1 (0.956); YIP3 (0.954); YPT31 (0.95); SEC23 (0.945); YOP1 (0.878); GCS1 (0.839); SEC13 (0.835); SEC24 (0.819); SEC12 (0.806); SEC31 (0.772); USO1 (0.744); TVP23 (0.734); GDI1 (0.727); TVP18 (0.696); YPT6 (0.696); SRO77 (0.696)
Homologues (species, bitscore): YIPF5 (Homo sapiens, 147.5); Yipf7 (Mus musculus, 152.1); yipf5 (Danio rerio, 147.9); yipf5 (Xenopus tropicalis, 147.9); CG12404 (Drosophila melanogaster, 142.5); F32D8.14 (Caenorhabditis elegans, 162.9); AT2G36300 (Arabidopsis thaliana, 106.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:810604-811350:- | gene-YGR172C_AKU4011 | rna-NM_001181301.3_AKU4011 | cds-NP_011688.3_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000021.1:88724-89470:- | gene-YGR172C_BG1 | rna-NM_001181301.3_BG1 | cds-NP_011688.3_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:816533-817279:- | gene-YGR172C_Bruggeman | rna-NM_001181301.3_Bruggeman | cds-NP_011688.3_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:812385-813131:- | gene-YGR172C_CAT1 | rna-NM_001181301.3_CAT1 | cds-NP_011688.3_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:811319-812065:- | gene-YGR172C_CBS1585 | rna-NM_001181301.3_CBS1585 | cds-NP_011688.3_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:815207-815953:- | gene-YGR172C_CBS436 | rna-NM_001181301.3_CBS436 | cds-NP_011688.3_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:802689-803435:- | gene-YGR172C_CBS6412 | rna-NM_001181301.3_CBS6412 | cds-NP_011688.3_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:808184-808930:- | gene-YGR172C_CBS6413 | rna-NM_001181301.3_CBS6413 | cds-NP_011688.3_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:842574-843320:- | gene-YGR172C_CENPK1137D | rna-NM_001181301.3_CENPK1137D | cds-NP_011688.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:797194-797940:- | gene-YGR172C_EthanolRed | rna-NM_001181301.3_EthanolRed | cds-NP_011688.3_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:801585-802331:- | gene-YGR172C_FaliES1 | rna-NM_001181301.3_FaliES1 | cds-NP_011688.3_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000112.1:43499-44245:- | gene-YGR172C_JAY291 | rna-NM_001181301.3_JAY291 | cds-NP_011688.3_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:814023-814769:- | gene-YGR172C_MUCL30387 | rna-NM_001181301.3_MUCL30387 | cds-NP_011688.3_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:813722-814468:- | gene-YGR172C_MUCL30388 | rna-NM_001181301.3_MUCL30388 | cds-NP_011688.3_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:806894-807640:- | gene-YGR172C_MUCL39482 | rna-NM_001181301.3_MUCL39482 | cds-NP_011688.3_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:822908-823654:- | gene-YGR172C_MUCL42920 | rna-NM_001181301.3_MUCL42920 | cds-NP_011688.3_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:842845-843591:- | gene-YGR172C_NCIM3186 | rna-NM_001181301.3_NCIM3186 | cds-NP_011688.3_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:802003-802749:- | gene-YGR172C_NCYC1407 | rna-NM_001181301.3_NCYC1407 | cds-NP_011688.3_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:821193-821939:- | gene-YGR172C_PE2H3 | rna-NM_001181301.3_PE2H3 | cds-NP_011688.3_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:826303-827049:- | gene-YGR172C_PE2H4 | rna-NM_001181301.3_PE2H4 | cds-NP_011688.3_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:842845-843591:- | gene-YGR172C_S288C | rna-NM_001181301.3_S288C | cds-NP_011688.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000035.1:66503-67249:- | gene-YGR172C_SA1 | rna-NM_001181301.3_SA1 | cds-NP_011688.3_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:822096-822842:- | gene-YGR172C_ThermosaccDry | rna-NM_001181301.3_ThermosaccDry | cds-NP_011688.3_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:926343-927089:- | gene-YGR172C_VR1 | rna-NM_001181301.3_VR1 | cds-NP_011688.3_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000016.1:123535-124281:- | gene-YGR172C_ZTW1 | rna-NM_001181301.3_ZTW1 | cds-NP_011688.3_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:813032-813778:- | gene-YGR172C_Sparadoxus | rna-NM_001181301.3_Sparadoxus | cds-NP_011688.3_Sparadoxus | 92.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |