Gene name: YIL082W-A
Reference locus (S288C): YIL082W-A
Gene biotype: protein_coding
Description: Transposon Ty3-I Gag-Pol polyprotein; Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes
Top 10 interactors (score): SKM1 (0.807); POL3 (0.749); MKC7 (0.572); YPS6 (0.565); YPS3 (0.562); YPS1 (0.52); DCP2 (0.499); LSM1 (0.499); SIP2 (0.499); DHH1 (0.451)
Homologues (species, bitscore): RTL1 (Homo sapiens, 90.9); Rtl1 (Mus musculus, 92.4); ENSDARP00000109033 (Danio rerio, 469.9); ENSXETP00000011003 (Xenopus tropicalis, 107.1); ORF158 (Arabidopsis thaliana, 70.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000132.1:197292-201790:+ | gene-YIL082W-A_BG1 | rna-NM_001181434.4_BG1 | cds-NP_012184.1_BG1 | 99.0 | 100.0 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005521.1:122830-127328:+ | gene-YIL082W-A_CAT1 | rna-NM_001181434.4_CAT1 | cds-NP_012184.1_CAT1 | 99.1 | 100.0 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000182.1:209-4707:- | gene-YIL082W-A_JAY291 | rna-NM_001181434.4_JAY291 | cds-NP_012184.1_JAY291 | 99.0 | 100.0 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:791261-795759:- | gene-YIL082W-A_PE2H3 | rna-NM_001181434.4_PE2H3 | cds-NP_012184.1_PE2H3 | 99.0 | 100.0 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:201675-206173:- | gene-YIL082W-A_PE2H4 | rna-NM_001181434.4_PE2H4 | cds-NP_012184.1_PE2H4 | 99.0 | 100.0 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001141.2:205635-210132:+ | gene-YIL082W-A_S288C | rna-NM_001181434.4_S288C | cds-NP_012184.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000137.1:161-4527:- | gene-YIL082W-A_SA1 | rna-NM_001181434.4_SA1 | cds-NP_012184.1_SA1 | 96.1 | 97.0 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | MBVZ01000048.1:314-4812:+ | gene-YIL082W-A_VR1 | rna-NM_001181434.4_VR1 | cds-NP_012184.1_VR1 | 99.0 | 100.0 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |