Gene name: YIF1
Reference locus (S288C): YNL263C
Gene biotype: protein_coding
Description: Integral membrane protein; required for the fusion of ER-derived COPII transport vesicles with the Golgi; interacts with Yip1p and Yos1p; localizes to the Golgi, the ER, and COPII vesicles; homolog of human YIPF3; Belongs to the YIF1 family
Top 10 interactors (score): YIP1 (0.999); YIP3 (0.979); PRP39 (0.962); YIP4 (0.96); YOS1 (0.955); YPT1 (0.936); SED5 (0.883); BTN2 (0.856); PLC1 (0.835); PRP42 (0.819); YIP5 (0.776); SNX4 (0.774); SEC23 (0.751); YHC3 (0.735); YPT10 (0.726); PEP8 (0.715); TLG1 (0.701); VPS27 (0.669); PEP1 (0.664); PFA3 (0.656)
Homologues (species, bitscore): YIF1A (Homo sapiens, 100.1); Yif1a (Mus musculus, 100.5); yif1a (Danio rerio, 104.0); yif1b (Xenopus tropicalis, 97.4); CG5484 (Drosophila melanogaster, 106.3); yif-1 (Caenorhabditis elegans, 95.1); AT3G59500 (Arabidopsis thaliana, 102.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:140672-141616:- | gene-YNL263C_AKU4011 | rna-NM_001183101.1_AKU4011 | cds-NP_014136.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:44630-45574:- | gene-YNL263C_BG1 | rna-NM_001183101.1_BG1 | cds-NP_014136.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:150493-151437:- | gene-YNL263C_Bruggeman | rna-NM_001183101.1_Bruggeman | cds-NP_014136.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:157789-158733:- | gene-YNL263C_CAT1 | rna-NM_001183101.1_CAT1 | cds-NP_014136.1_CAT1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:141072-142016:- | gene-YNL263C_CBS1585 | rna-NM_001183101.1_CBS1585 | cds-NP_014136.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:136169-137113:- | gene-YNL263C_CBS436 | rna-NM_001183101.1_CBS436 | cds-NP_014136.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:137483-138427:- | gene-YNL263C_CBS6412 | rna-NM_001183101.1_CBS6412 | cds-NP_014136.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:137765-138709:- | gene-YNL263C_CBS6413 | rna-NM_001183101.1_CBS6413 | cds-NP_014136.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:140716-141660:- | gene-YNL263C_CENPK1137D | rna-NM_001183101.1_CENPK1137D | cds-NP_014136.1_CENPK1137D | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:138317-139261:- | gene-YNL263C_EthanolRed | rna-NM_001183101.1_EthanolRed | cds-NP_014136.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:133054-133998:- | gene-YNL263C_FaliES1 | rna-NM_001183101.1_FaliES1 | cds-NP_014136.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000082.1:44228-45172:- | gene-YNL263C_JAY291 | rna-NM_001183101.1_JAY291 | cds-NP_014136.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:146281-147225:- | gene-YNL263C_MUCL30387 | rna-NM_001183101.1_MUCL30387 | cds-NP_014136.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:144859-145803:- | gene-YNL263C_MUCL30388 | rna-NM_001183101.1_MUCL30388 | cds-NP_014136.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:138562-139506:- | gene-YNL263C_MUCL39482 | rna-NM_001183101.1_MUCL39482 | cds-NP_014136.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:140831-141775:- | gene-YNL263C_MUCL42920 | rna-NM_001183101.1_MUCL42920 | cds-NP_014136.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:146865-147809:- | gene-YNL263C_NCIM3186 | rna-NM_001183101.1_NCIM3186 | cds-NP_014136.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:140663-141607:- | gene-YNL263C_NCYC1407 | rna-NM_001183101.1_NCYC1407 | cds-NP_014136.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:137564-138508:- | gene-YNL263C_PE2H3 | rna-NM_001183101.1_PE2H3 | cds-NP_014136.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:136952-137896:- | gene-YNL263C_PE2H4 | rna-NM_001183101.1_PE2H4 | cds-NP_014136.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:146896-147840:- | gene-YNL263C_S288C | rna-NM_001183101.1_S288C | cds-NP_014136.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000034.1:44298-45242:- | gene-YNL263C_SA1 | rna-NM_001183101.1_SA1 | cds-NP_014136.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:133911-134855:- | gene-YNL263C_ThermosaccDry | rna-NM_001183101.1_ThermosaccDry | cds-NP_014136.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:152823-153767:- | gene-YNL263C_VR1 | rna-NM_001183101.1_VR1 | cds-NP_014136.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:44247-45191:- | gene-YNL263C_ZTW1 | rna-NM_001183101.1_ZTW1 | cds-NP_014136.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:144110-145060:- | gene-YNL263C_Sparadoxus | rna-NM_001183101.1_Sparadoxus | cds-NP_014136.1_Sparadoxus | 90.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |