YHR214C-C (YHR214C-C)

Gene profile

Gene name: YHR214C-C
Reference locus (S288C): YHR214C-C
Gene biotype: protein_coding

Description: Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag

Top 10 interactors (score): Unknown

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011814.1:496801-498123:- gene-YHR214C-C_NCIM3186 rna-NM_001184437.3_NCIM3186 cds-NP_036195.3_NCIM3186 90.5 92.0 Mismatch 1 1 1 False True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994146.1:715665-716987:+ gene-YHR214C-C_PE2H3 rna-NM_001184437.3_PE2H3 cds-NP_036195.3_PE2H3 91.7 92.0 Mismatch 1 1 1 False True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999879.1:87659-88981:- gene-YHR214C-C_PE2H4 rna-NM_001184437.3_PE2H4 cds-NP_036195.3_PE2H4 91.8 92.0 Mismatch 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001140.6:547910-549346:- gene-YHR214C-C_S288C rna-NM_001184437.3_S288C cds-NP_036195.3_S288C 100.0 100.0 Verified 1 1 1 True True False False False

Additional files