YHR214C-B (YHR214C-B)

Gene profile

Gene name: YHR214C-B
Reference locus (S288C): YHR214C-B
Gene biotype: protein_coding

Description: Transposon Ty1-H Gag-Pol polyprotein; Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes; YHR214C-B has a paralog, YAR070C, that arose from a segmental duplication

Top 10 interactors (score): Unknown

Homologues (species, bitscore): CRK8 (Arabidopsis thaliana, 97.1)

External links:
Saccharomyces genome database (SGD)
STRING database
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
CAT1 GCA_001738705.1 Bioethanol South America MBWC01000007.1:1-499:+ gene-YHR214C-B_CAT1 rna-NM_001181431.2_CAT1 cds-NP_012086.1_CAT1 9.2 9.2 Mismatch 1 1 0 False False True False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011814.1:492855-498123:- gene-YHR214C-B_NCIM3186 rna-NM_001181431.2_NCIM3186 cds-NP_012086.1_NCIM3186 71.4 97.8 Mismatch 1 1 1 False True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994146.1:715665-720933:+ gene-YHR214C-B_PE2H3 rna-NM_001181431.2_PE2H3 cds-NP_012086.1_PE2H3 96.9 97.8 Mismatch 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001140.6:543964-549346:- gene-YHR214C-B_S288C rna-NM_001181431.2_S288C cds-NP_012086.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False

Additional files