Gene name: YHR214C-B
Reference locus (S288C): YHR214C-B
Gene biotype: protein_coding
Description: Transposon Ty1-H Gag-Pol polyprotein; Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes; YHR214C-B has a paralog, YAR070C, that arose from a segmental duplication
Top 10 interactors (score): Unknown
Homologues (species, bitscore): CRK8 (Arabidopsis thaliana, 97.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CAT1 | GCA_001738705.1 | Bioethanol | South America | MBWC01000007.1:1-499:+ | gene-YHR214C-B_CAT1 | rna-NM_001181431.2_CAT1 | cds-NP_012086.1_CAT1 | 9.2 | 9.2 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:492855-498123:- | gene-YHR214C-B_NCIM3186 | rna-NM_001181431.2_NCIM3186 | cds-NP_012086.1_NCIM3186 | 71.4 | 97.8 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:715665-720933:+ | gene-YHR214C-B_PE2H3 | rna-NM_001181431.2_PE2H3 | cds-NP_012086.1_PE2H3 | 96.9 | 97.8 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:543964-549346:- | gene-YHR214C-B_S288C | rna-NM_001181431.2_S288C | cds-NP_012086.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |