Gene name: YHR020W
Reference locus (S288C): YHR020W
Gene biotype: protein_coding
Description: Putative proline--tRNA ligase YHR020W; Prolyl-tRNA synthetase; N-terminal domain shows weak homology to prokaryotic posttransfer editing domain, but does not possess posttransfer editing activity; may interact with ribosomes, based on co-purification experiments
Top 10 interactors (score): MES1 (0.999); CDC60 (0.999); ILS1 (0.999); GLN4 (0.998); ARC1 (0.998); FRS1 (0.996); DED81 (0.996); DPS1 (0.995); KRS1 (0.991); GUS1 (0.991); ALA1 (0.983); MSK1 (0.979); AIM10 (0.975); GLO1 (0.966); THS1 (0.965); MDM20 (0.964); WRS1 (0.962); GUA1 (0.945); TYS1 (0.943); NAM2 (0.93)
Homologues (species, bitscore): EPRS (Homo sapiens, 618.2); Eprs (Mus musculus, 611.3); eprs (Danio rerio, 628.2); eprs (Xenopus tropicalis, 619.8); CG5394 (Drosophila melanogaster, 634.0); pars-1 (Caenorhabditis elegans, 598.6); AT3G62120 (Arabidopsis thaliana, 548.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:132538-134604:+ | gene-YHR020W_AKU4011 | rna-NM_001179150.1_AKU4011 | cds-NP_011884.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000053.1:52483-54549:+ | gene-YHR020W_BG1 | rna-NM_001179150.1_BG1 | cds-NP_011884.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:139116-141182:+ | gene-YHR020W_Bruggeman | rna-NM_001179150.1_Bruggeman | cds-NP_011884.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:133703-135769:+ | gene-YHR020W_CAT1 | rna-NM_001179150.1_CAT1 | cds-NP_011884.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:132870-134936:+ | gene-YHR020W_CBS1585 | rna-NM_001179150.1_CBS1585 | cds-NP_011884.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:126207-128273:+ | gene-YHR020W_CBS436 | rna-NM_001179150.1_CBS436 | cds-NP_011884.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:132560-134626:+ | gene-YHR020W_CBS6412 | rna-NM_001179150.1_CBS6412 | cds-NP_011884.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:132203-134269:+ | gene-YHR020W_CBS6413 | rna-NM_001179150.1_CBS6413 | cds-NP_011884.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:137267-139345:+ | gene-YHR020W_CENPK1137D | rna-NM_001179150.1_CENPK1137D | cds-NP_011884.1_CENPK1137D | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:132084-134150:+ | gene-YHR020W_EthanolRed | rna-NM_001179150.1_EthanolRed | cds-NP_011884.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:133063-135129:+ | gene-YHR020W_FaliES1 | rna-NM_001179150.1_FaliES1 | cds-NP_011884.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000424.1:296-2362:- | gene-YHR020W_JAY291 | rna-NM_001179150.1_JAY291 | cds-NP_011884.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:139122-141197:+ | gene-YHR020W_MUCL30387 | rna-NM_001179150.1_MUCL30387 | cds-NP_011884.1_MUCL30387 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:139606-141672:+ | gene-YHR020W_MUCL30388 | rna-NM_001179150.1_MUCL30388 | cds-NP_011884.1_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:131897-133963:+ | gene-YHR020W_MUCL39482 | rna-NM_001179150.1_MUCL39482 | cds-NP_011884.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:137427-139493:+ | gene-YHR020W_MUCL42920 | rna-NM_001179150.1_MUCL42920 | cds-NP_011884.1_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:143878-145944:+ | gene-YHR020W_NCIM3186 | rna-NM_001179150.1_NCIM3186 | cds-NP_011884.1_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:131311-133377:+ | gene-YHR020W_NCYC1407 | rna-NM_001179150.1_NCYC1407 | cds-NP_011884.1_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:133879-135945:+ | gene-YHR020W_PE2H3 | rna-NM_001179150.1_PE2H3 | cds-NP_011884.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:141320-143386:+ | gene-YHR020W_PE2H4 | rna-NM_001179150.1_PE2H4 | cds-NP_011884.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:143996-146062:+ | gene-YHR020W_S288C | rna-NM_001179150.1_S288C | cds-NP_011884.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000075.1:446-2512:- | gene-YHR020W_SA1 | rna-NM_001179150.1_SA1 | cds-NP_011884.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:134152-136218:+ | gene-YHR020W_ThermosaccDry | rna-NM_001179150.1_ThermosaccDry | cds-NP_011884.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:139950-142016:+ | gene-YHR020W_VR1 | rna-NM_001179150.1_VR1 | cds-NP_011884.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:125389-127467:+ | gene-YHR020W_ZTW1 | rna-NM_001179150.1_ZTW1 | cds-NP_011884.1_ZTW1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:132270-134339:+ | gene-YHR020W_Sparadoxus | rna-NM_001179150.1_Sparadoxus | cds-NP_011884.1_Sparadoxus | 92.7 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |