Gene name: YHL009W-B
Reference locus (S288C): YHL009W-B
Gene biotype: protein_coding
Description: Transposon Ty4-H Gag-Pol polyprotein; Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes
Top 10 interactors (score): SDS24 (0.572); YJL225C (0.517); SRL2 (0.495); ABF1 (0.495); YRF1-5 (0.454); YRF1-6 (0.452); UTP7 (0.451); YRF1-2 (0.45); YRF1-4 (0.45); YRF1-7 (0.45)
Homologues (species, bitscore): GIN1 (Danio rerio, 51.6); CRK8 (Arabidopsis thaliana, 107.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CAT1 | GCA_001738705.1 | Bioethanol | South America | MBWC01000030.1:239-5648:+ | gene-YHL009W-B_CAT1 | rna-NM_001184404.2_CAT1 | cds-NP_058133.1_CAT1 | 99.7 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:79069-84479:+ | gene-YHL009W-B_CENPK1137D | rna-NM_001184404.2_CENPK1137D | cds-NP_058133.1_CENPK1137D | 99.9 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:433574-439029:- | gene-YHL009W-B_EthanolRed | rna-NM_001184404.2_EthanolRed | cds-NP_058133.1_EthanolRed | 98.1 | 99.9 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | MBWD01000011.1:239-5699:+ | gene-YHL009W-B_FaliES1 | rna-NM_001184404.2_FaliES1 | cds-NP_058133.1_FaliES1 | 98.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000212.1:1-2449:- | gene-YHL009W-B_JAY291 | rna-NM_001184404.2_JAY291 | cds-NP_058133.1_JAY291 | 45.0 | 45.2 | Unannotated | 1 | 1 | 0 | False | False | True | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:462551-467960:+ | gene-YHL009W-B_PE2H3 | rna-NM_001184404.2_PE2H3 | cds-NP_058133.1_PE2H3 | 99.7 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:462294-467703:+ | gene-YHL009W-B_PE2H4 | rna-NM_001184404.2_PE2H4 | cds-NP_058133.1_PE2H4 | 99.7 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:85909-91318:+ | gene-YHL009W-B_S288C | rna-NM_001184404.2_S288C | cds-NP_058133.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000115.1:3876-9285:+ | gene-YHL009W-B_SA1 | rna-NM_001184404.2_SA1 | cds-NP_058133.1_SA1 | 99.7 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | MBWA01000006.1:239-5699:+ | gene-YHL009W-B_ThermosaccDry | rna-NM_001184404.2_ThermosaccDry | cds-NP_058133.1_ThermosaccDry | 98.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | MBVZ01000190.1:311-5720:- | gene-YHL009W-B_VR1 | rna-NM_001184404.2_VR1 | cds-NP_058133.1_VR1 | 99.7 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:797240-802247:+ | gene-YHL009W-B_Sparadoxus | rna-NM_001184404.2_Sparadoxus | cds-NP_058133.1_Sparadoxus | 54.7 | 79.1 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |